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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgtttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag

Basic information

species Glycine max
transcript GLYMA07G33620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 2
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgtttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatt-tcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag
||| || |||||||| ||||||||||| || ||||| ||||| ||||| || || ||||||||||| || || ||| |||| || ||||| ||||| |||||  |   |  || | ||   | | | |       | | ||  | |        |  |  | ||||||    ||   ||   |  ||| ||||   | ||     || |                                                                     
TTGTACCGCTGGTGGTGCTTATATTCCGGCAATGGCTGATGAGAGTGTAATAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttctctgc-ctgccattttgattattcattttatgttttgca-----tggtgagatcttgagaacta---tccaatgttttcaaatcgcctatgcaccaata---------------------------------------------------------------------

upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 2
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgtttgctctagctactcttgtact-ctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag
||||||||||||||| || ||||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||| |||| || ||||| ||||| |||||  |      ||       |  |  | |  | ||   ||||||  | | | | | |  || |     || || ||   | | |  |      |  ||||||                                                                            
TTGCACTGCTGGTGGGGCATATATTCCTGCAATGGCGGATGAGAGTGTAATAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatattctggaaccattttgtttattttctaaatgataaaattttggtgtctaaatctctaatatattaaagcaccggtcgtcccgcgt--caatat----------------------------------------------------------------------------

upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgt----ttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag
 |||||||||||||| || || |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| || || ||||| |||||    || ||| || |||| |    ||||      ||  ||  || |||   |   |||||      |  |    ||||        ||||| ||                                                                                     
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctct-cgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag----------------------------------------------------------------------------------

upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 3
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgtttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttg-atttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag
||| ||||||||||| |||||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||| |||| ||||| || ||||| |||||| | || || |  | | | |  |  |||| ||   ||  | |  |||| |   |   | || ||| || |||   || | || ||    ||||  || |                                                                             
TTGTACTGCTGGTGGTGCTTATATACCTGCAATGGCGGATGAAAGTGTTATGGTCAAAGGAAATGGTACCATATTTCTAGCTGGGCCTCCACTTGTGAAGgttagttccagatcttttggcatgcctaaatgcttcatg-cagtggctggattcataattctttttgcatgttttgcatgt-ttcctgaagaattataaaaa----------------------------------------------------------------------------