Sequence
atgc intronic sequence ATGC exonic sequenceGGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcaccctacaattaatcattaaatgcatcatcagttccactgttttttaacataaaaagtgttaacaaatgtgacattggaaacaacttactatg...
Basic information
species | Glycine max |
transcript | GLYMA07G33600.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G33600.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G19290.2 (Arabidopsis thaliana), 5'ss of exon 2
--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcaccctacaattaatcattaaatgcatcatcagttccactgttttttaacataaaaagtgttaacaaatgtgacattggaaacaacttactatg
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ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaat------ataaatc-taactaaacttatc--tagtccc--ttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacag-
upper sequence: GLYMA07G33600.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G19290.3 (Arabidopsis thaliana), 5'ss of exon 2
--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcaccctacaattaa--tcattaaatgcatcat---cagttccactgtttt---ttaacat------aaaaagtgttaac---aaatgtgacattggaaacaacttactatg----------------------------------------------------------------------
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ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151393488|gb|EV263363.1|EV263363EST: GAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAG GCCTACACTTTCGAACTAGAAGCTGAGGTTGCAAAACTTAAGGAATTAAAC
genomic: GAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcacc ... tgaatggcagGCCTACACTTTCGAACTAGAAGCTGAGGTTGCAAAACTTAAGGAATTAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCTGCGAGGTCAAGGGCTCGTAAGCAGgttagtcaccctacaattaatcattaaatgcatcatcagttccactgttttttaacataaaaagtgttaacaaatgtgacattggaaacaacttactatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC