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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatatgatccatccgaaaatgatttaccgattttgctttgtgattgaaatgaattgtgacggtttagacctaaacgaagctggttgccaaataag...

Basic information

species Glycine max
transcript GLYMA07G32960.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183243|gb|HO028456.1|HO028456
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAGG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298172471|gb|HO019511.1|HO019511
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|193558801|gb|FK510798.1|FK510798
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298172644|gb|HO019684.1|HO019684
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298197208|gb|HO041951.1|HO041951
EST:     CGGATTGTTTCAAGTGTTGCACCGAAAACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298177783|gb|HO027336.1|HO027336
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298188030|gb|HO031987.1|HO031987
EST:     CGGATTGTTTCAAGTGTTGCACCGAACACTCCAACGATGCCACTACCAAG                         GTTACCTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|208340857|gb|GE137419.1|GE137419
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatatgatccatccgaaaatgatttaccgattttgctttgtgattgaaatgaattgtgacggtttagacctaaacgaagctggttgccaaataag

- - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatga