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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatatgatccatccgaaaatgatttaccgattttgctttgtgattgaaatgaattgtgacggtttagacctaaacgaagctggttgccaaataag...

Basic information

species Glycine max
transcript GLYMA07G32960.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186107|gb|HO036740.1|HO036740
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298183243|gb|HO028456.1|HO028456
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAGG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298172471|gb|HO019511.1|HO019511
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|192294091|gb|FG986180.1|FG986180
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298181841|gb|HO026016.1|HO026016
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTGCTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|10709622|gb|BF009346.1|BF009346
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298198605|gb|HO040144.1|HO040144
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCCGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|9439728|gb|BE440242.1|BE440242
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|192300920|gb|FG992980.1|FG992980
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|7029651|gb|AW459368.1|AW459368
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298172644|gb|HO019684.1|HO019684
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298178377|gb|HO024112.1|HO024112
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298174849|gb|HO017958.1|HO017958
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|192300921|gb|FG992981.1|FG992981
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|23054540|gb|BU577628.1|BU577628
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|193558801|gb|FK510798.1|FK510798
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|15201665|gb|BI424992.1|BI424992
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298196432|gb|HO041175.1|HO041175
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298197208|gb|HO041951.1|HO041951
EST:     CGGATTGTTTCAAGTGTTGCACCGAAAACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298177783|gb|HO027336.1|HO027336
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298170253|gb|HO018877.1|HO018877
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298176443|gb|HO026678.1|HO026678
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACCTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|298188030|gb|HO031987.1|HO031987
EST:     CGGATTGTTTCAAGTGTTGCACCGAACACTCCAACGATGCCACTACCAAG                         GTTACCTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: gi|208340857|gb|GE137419.1|GE137419
EST:     CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG                         GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatatgatccatccgaaaatgatttaccgattttgctttgtgattgaaatgaattgtgacggtttagacctaaacgaagctggttgccaaataag

- - - - - - - - - - - - - - -  CGAAGA