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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaaaatcgttactttaaagcgggga...

Basic information

species Glycine max
transcript GLYMA07G31840.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactctctcttcaattttcatttgtatcactcttctgatcgcgtg------tcttgtgttgtgcttagaagaaaaatcgttactttaaagcgggga
|||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| |||||||| |    | | |  |||||     | |   |  |       |    |  |||||      |||||  | ||| |   ||   |  | ||    |     |     
TTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtgctcctccttctctctctctcttgatgctgatctgttctgaaatgcgtggagatctcttgcatcgtgtt---aatctagcttgtccgctcggtcctt---

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatt-tcactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttg-tgcttagaagaaaaatcgttactttaaagcgggga
|||||||| || || || ||||| ||||||||||||||||| || ||||||||||||| |||||||| |  ||| || |   | || |    ||  |||   |  | |   |  | | | |  | |||||| |  |   |||   ||||    |        | |  
TTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTgtgagtattctcgccgccgctcccccgtttgttt-cgtttccccaatattagagagagtggtgttggtagtggcaagccgaatcagcgcgaacccttgtgt-

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcac--tctctcttcaattttcatttgt-atcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaaaatcgttactt-taaagcgggga
|||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| |||||||| |   |||| |   |||  |    | |  |||| |  |  |||||     || | |  | ||||| ||||| ||    |  | ||  ||  |   ||     
TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtatttttcgtttctcttagatccgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgcc----

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcac-tctctcttcaattttcatttgtatcactcttct--gatc-gcgtgtcttgtgttgtgcttagaagaaaaatcgttactt-taaagcgggga
|||||||| || || ||  |||| |||||||| ||||||||||||||||||||||||| |||||||| |   |||| | ||   | ||   | |   || | ||  |  |||  |||| | | |  | ||||| ||||| ||    |  | ||  ||  |   ||     
TTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCTgtgagtgtttcgcgtcctccatctgctctgtattttttcgtttctcttagatctgtgggagtggtgttttgcttcgagcccactttgtagctgatggtgc-----

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt--cactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaa--aatcgttact-ttaaagcgggga
|||||||| || || ||  | || |||||||||||||||||||||||||||||||||| ||| |||| |   ||   || || || ||   | |  |||| | ||  ||||     |  |||  | ||||| | || ||| |       | | |  | ||||  ||    
TTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACTgtgagtgttcgacattccctatttgctctgtatttttgtc--tcttagatccatgtgagtggtgttct-ctcagatgctcttcgtagctgttgttaagacgat--

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaaaatcgttactttaaagcgggga--
|||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||||||   |||   ||||| ||  || ||||||  | |     |    ||  ||||    ||     | |     ||    | |||  | || | |   |   
TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACTgtaagattttgcttctctgtttcatcttcattcat-ttttaatagatatttcgtgctaggttgccagatctattgattggt-gtttgtatatatcactgtta

upper sequence: GLYMA07G31840.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtg---ttgtgcttagaagaaaaatcgttac-tttaaagcgggga
 |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   ||||||| |  | | |   | |  | |  |||     |||  |       | ||   || |  |  |     |  |  || |  | |||  |    ||||  || ||  
CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCTgtgagtagtgc---cgcaatgctgtttgtcaatgtgccgtgggcttaatgttgttttataagggtccggtcacagtacgagaatattagggtttagtgctggt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711766|gb|FK647865.1|FK647865
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298167911|gb|HO013174.1|HO013174
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298189754|gb|HO038157.1|HO038157
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298164705|gb|HO014350.1|HO014350
EST:     CCCACCACTGGGTGCCGGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|208041564|gb|GD843014.1|GD843014
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298166233|gb|HO009204.1|HO009204
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|208190348|gb|GD994524.1|GD994524
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|19346568|gb|BM891448.1|BM891448
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|193394245|gb|FK360308.1|FK360308
EST:     AAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: AAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|213601378|gb|DB956684.1|DB956684
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298164434|gb|HO014079.1|HO014079
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCAATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|208231930|gb|GE030885.1|GE030885
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGG
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGG
EST: gi|298188012|gb|HO031969.1|HO031969
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|7684901|gb|AW755549.1|AW755549
EST:     AGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: AGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|193447979|gb|FK414118.1|FK414118
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|16347870|gb|BI973465.1|BI973465
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|8825892|gb|BE209622.1|BE209622
EST:     AGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: AGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298187978|gb|HO031935.1|HO031935
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|9259173|gb|BE347320.1|BE347320
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|208156915|gb|GD956343.1|GD956343
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298190488|gb|HO032609.1|HO032609
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298171661|gb|HO021253.1|HO021253
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|10847435|gb|BF070122.1|BF070122
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298170108|gb|HO018732.1|HO018732
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|207696549|gb|GD678670.1|GD678670
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298170056|gb|HO018680.1|HO018680
EST:     CCACCACTGGGTGGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCACCACTGGGT-GCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298168528|gb|HO009458.1|HO009458
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAGGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|193324144|gb|FK292592.1|FK292592
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|298168505|gb|HO009435.1|HO009435
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTAATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|208209117|gb|GE003527.1|GE003527
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
EST: gi|193703199|gb|FK639673.1|FK639673
EST:     CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT                         TCGAGCATTTTGGGACAAGTGGATCTCCCAGGAGGTTCTTGGTGATGCTCT
genomic: CCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcattt ... tatattgcagTCGAGCATTTTGGGACAAGAGGATCTCCCAGGAGGTTCTTGGTGATGCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTgtaatcatttcactctctcttcaattttcatttgtatcactcttctgatcgcgtgtcttgtgttgtgcttagaagaaaaatcgttactttaaagcgggga

- - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC