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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGCCACTAATTCAAGGCTTCCACCTCTTAAGCCAGAACCTGTTGATTATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataaaattgaggttgttaaaatccgcagtttctttttttctatttatagtgtgttgttgccagtattgattgtggttttgctaattctgatctatttcaacatcag

Basic information

species Glycine max
transcript GLYMA07G31090.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812614|gb|BQ297092.1|BQ297092
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|192297701|gb|FG989591.1|FG989591
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|10842945|gb|BF066303.1|BF066303
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|7146910|gb|AW508832.1|AW508832
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|298199298|gb|HO042661.1|HO042661
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCGATG                         GATTTGAAAAAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGA
EST: gi|19453024|gb|BM954434.1|BM954434
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|9259727|gb|BE347874.1|BE347874
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|23057519|gb|BU578193.1|BU578193
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|19934355|gb|BQ079383.1|BQ079383
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|42722448|gb|CK768347.1|CK768347
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|16996884|gb|BM086256.1|BM086256
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|151409246|gb|EV279054.1|EV279054
EST:     ATAATTATGGCTTTGATGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|254315266|gb|GR830259.1|GR830259
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA