Sequence
atgc intronic sequence ATGC exonic sequenceTGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaaaattcagttcattgtggtattaattctaatatgttaatctgataattttgtgaaatttttagttgatttattggtcaatagtacctgaagtta...
Basic information
species | Glycine max |
transcript | GLYMA07G30990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g08120.1 (Oryza sativa), 5'ss of exon 3
TGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaa-aattcagttca-ttgtggtattaattctaatatgttaatctgataattttgtgaaatttttagttgatttatt---ggtcaatagtacctgaagtta-----------------------------------------------------------------------------
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TGTTATTGTTGAAGCATTAAAGGTGGATAGTCTGCAGAGGCTTTGCTCATCACTGGAACCAATTCTTCGTAGAGTGgtaagaacaaagcaattctcttttaagcggaattctattatcatg-tcgctttactctctttttttttgcataggtttattctagcatgctactgtctacatttatatgttccttcactactgttaattatttcttgcacttagttacattcggttatatatattctctgtatacatactag
upper sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g35470.4 (Oryza sativa), 5'ss of exon 3
TGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgt----aagaaaattcagttcattgtggtattaattctaatatgttaatctgataattttgtgaaattt-ttagttgatttat-tggtcaatagtac-ctgaagtta
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TGTCATTGTGGAAGCTCTTAAGGTGGATAGTTTGCAGAAGCTTTGTTCATCACTGGAGCCAATTCTTCGTAGAGTTgtgagtaaaagaactcatagcattg-gatgttagacat--ttcttttctatagagatcatacattatttctttgttgatcaatctaattcattatattctggaatag
upper sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 2
TGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaaaattcagttcattgtggtattaattctaatatgttaatctgataattttg--tgaaatttttagttgatttattggtcaatagtacctgaagtta--
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TGTAATAGTTGAAGCTCTGAAGGTGGATAGTCTGCAGAAACTTTGCTCATCATTGGAACCTATTCTTCGGAGAGTTgtaagataaataacctctt----atatggatttctttactttctgtgaagaatttaggataacagccttctgttttttgtttgttgttttttttttgggtaatt
upper sequence: GLYMA07G30990.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0181g00220.t01 (Vitis vinifera), 5'ss of exon 4
TGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaaaattcagttcattgtggtattaattctaatatgttaatctgataattttg--tgaaatttttagttgatttattggtcaatagtacctgaagtta--
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TGTAATAGTTGAAGCTCTGAAGGTGGATAGTCTGCAGAAACTTTGCTCATCATTGGAACCTATTCTTCGGAGAGTTgtaagataaataacctctt----atatggatttctttactttctgtgaagaatttaggatagcagccttctgttttttgtttgttgttttttttttgggtaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27445913|gb|CA953036.1|CA953036EST: CAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTT GTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTT
genomic: CAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaaaat ... tgctcaacagGTTAGTGAAGAAGTTGAGCGTGCTTTGGCAAAACTAGGCCCTGCCAAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAATTGTTGAAGCCCTGAAGGTTGACAGTCTGCAGAAACTTTGCTCGTCACTGGAGCCTATTCTACGCAGAGTTgtaagaaaattcagttcattgtggtattaattctaatatgttaatctgataattttgtgaaatttttagttgatttattggtcaatagtacctgaagtta
- - - - - - - - - - - - - - - CTGCAG