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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCTCGTCGGTGCCCTCATCAACGGTTTCGCCCAACACGTTTGGATGTTAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAGgtatcgttcgtaatcacgttggagatgtgaaatctattactaataattttattatgaaacctgaaatcaaatatgctgatttttgttcctttcaaatctc...

Basic information

species Glycine max
transcript GLYMA07G30880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G11260.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTCCTCGTCGGTGCCCTCATCAACGGTTTCGCCCAACACGTTTGGATGTTAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAGgt--atcgttcgtaatc----acgttggagatgtgaaatctatt-actaataattttattatgaaac-ctgaaatcaaatatgctgatttttgttcctttcaaatctc
 |||  || ||| || |||||||| ||||||||| |||| ||||||||| | ||||| ||||| |||||||| || ||||||||||| ||||| ||||||||   || ||   || |    |  ||    | ||    |   || || |||||   |   || |     |   ||||||     |||||||| ||  |   | |    
CTTCTGCGCCGGAGCTCTCATCAATGGTTTCGCCAAACATGTTTGGATGCTCATCGTCGGTCGTATCTTGCTTGGTTTCGGTATCGGTTTCGCTAATCAGgtccgtcattaaaaaaccttaattttaattacgttggtttagtttacaaataaccat-ccataatgtgtttctatcaaa---attgatttttttttgtcgaaca----

upper sequence: GLYMA07G30880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21480.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTCCTCGTCGGTGCCCTCATCAACGGTTTCGCCCAACACGTTTGGATGTTAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAGgtatcgttcgtaatcacgttggagatgtgaaatctattac-taataattttattatgaaacctgaaatcaaatatgctgatttttgttcctt--tcaaatctc-------
 |||  || ||| || ||  | |||||||||||      |||||||||| | ||||| |||||  | || ||||| ||||||||||||||| |||||||||| |  ||  | |||       | || | | || | |||| | ||| |||| || |    | | ||| || |       |  |   |  ||   |  || ||        
CTTCTGCGCCGGAGCTCTTCTTAACGGTTTCGCAACTGCCGTTTGGATGCTCATCGTTGGTCGTTTGTTACTCGGTTTCGGTATCGGCTTCACCAATCAGgtcttattttttatct------aaatattacattttttacctcatacttttgtttt----cttcaaaacagacccaaatagctccataactcggtggaaactgttatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820288|gb|BE555798.1|BE555798
EST:     TAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAG                         TCTGTGCCACTCTACCTATCTGAAATGGCTCCATACAAATATAGAGGAGCA
genomic: TAATCGTGGGTCGGATCTTGCTCGGGTTCGGTATCGGCTTCGCCAATCAGgtatcgttcg ... tgatgaacagTCTGTGCCACTCTACCTATCTGAAATGGCTCCATACAAATATAGAGGAGCA