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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt...

Basic information

species Glycine max
transcript GLYMA07G24950.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g50440.1 (Oryza sativa), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttcta-tgacaaagtaaatattttgaatttcagtgggggctt
||||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| ||||  || ||||| || |||||||| || || |||| ||||   || ||| |   |    | |    | |  ||   | ||        || | ||||   | |||   |     ||  || |||||   | |  |   
TGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATATATATGCGTTCCTGGACAGGAACTATCATTGGCCCTCCTAATgta---tgttgtataacacccatta---gtagatattaactgcatttgcttctgtatgctcaaactgaatgatcttttacattcaatttgtcttgcag---

upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G090172_T02 (Zea mays), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt
||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||  || ||||| || |||||||| ||||| || | |||| | ||| |     ||       || | ||  || |  |    |  | | |  ||  ||  |   |  ||    | |  ||  |||   | |  |   
TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGATGATGCTGATGACATATATATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAATgtatgctgcaga--aatacc-----catagtgagatacataatacattttctttattattttcaaacctgagaggttttactgcgtttattttgcag---

upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G022859_T01 (Zea mays), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt
||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||  ||||  || ||||| || |||||||| ||||| || |  ||| | | | |     ||    | ||        || |  |    |  |   |  ||  |   |   |  ||    |    || ||||      |     
TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGACGATGCTGATGACATATTTATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAACgtatgctacaga--aatacccataact-----agatacataatgcatttgttttgttattctcaaacctgagatgtttcactgcatttttcgcag-----

upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt------
|||||| || ||||| ||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||| || ||  | ||||| |||| |||| ||  || ||| |   | |       |||        || |   |||  | |||| |    | |  | | || | |||   | ||  ||| | |  |      
TGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCTAATgtatgtatctctctatcgatctctgagttttg----ttttagatt-tatctgtgtttgatagagtaaagatgcaa-tttttaacacttttgtgagagaattgttgg

upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagt-aaatat---tttgaatttcagtgggggctt
|||||| |||||||| ||||| || || || ||||||||||||||||||||||| || |  ||||||||||||||||| || ||  | ||||| | || ||| ||||    |||  |   | |  | | |   |         |||| |   |  |    ||||||  | | |  ||||    |     ||| | ||       
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttc--atcttttgtttaacttaaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa--

upper sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 2
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacaca-ttggaatccccagctaacatccctatttgcttctatgacaaagtaaatattttgaatttcagtgggggctt-----
 || ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||| ||| ||||      | || ||||| ||||| ||   ||       | |  ||| ||   | |         || || || ||  ||||||  ||||  | |      
GGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATACATGCAGTCGTGGACTGGGACTATCATTGGTCCTCCTAATgtgagtt------ttttctttttcacacaattttcatgatataatgaactccttacaggttgaatctctcaactagatgttaagaatttatgtggttggtattatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347326|gb|GR853575.1|GR853575
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298170625|gb|HO019249.1|HO019249
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298164494|gb|HO014139.1|HO014139
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCGTCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|21887768|gb|BQ740981.1|BQ740981
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298194253|gb|HO040901.1|HO040901
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|15814266|gb|BI786541.1|BI786541
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|254347325|gb|GR853574.1|GR853574
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|208123865|gb|GD922443.1|GD922443
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTT
EST: gi|298199013|gb|HO042376.1|HO042376
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|208158799|gb|GD954688.1|GD954688
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTT
EST: gi|298172716|gb|HO019756.1|HO019756
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298185548|gb|HO030761.1|HO030761
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298182508|gb|HO031243.1|HO031243
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|15661899|gb|BI699270.1|BI699270
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298175103|gb|HO014906.1|HO014906
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|208267617|gb|GE063740.1|GE063740
EST:     TGACATATACATGCAATCTTGGACTGGGACTATCATCCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: TGACATATACATGCAATCTTGGACTGGGACTATCAT-CGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|192301633|gb|FG994369.1|FG994369
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|7924626|gb|AW830652.1|AW830652
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|21993992|gb|BQ785520.1|BQ785520
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|151403964|gb|EV273774.1|EV273774
EST:     ATGGCATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|151409397|gb|EV279205.1|EV279205
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
EST: gi|298196851|gb|HO041594.1|HO041594
EST:     ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGT                         ACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT
genomic: ATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgct ... attttaccagACTGTTCATGAAGGGCGTATCTACCAGTTGAAATTGTTTTGCAGCAGGGAT