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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGACTTTTCTATCACAAAGTCTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatggacttaccaatttaattggtttattgttcatcacttaagttcttgtgcatgttattcttatgatcttatcacttaatttgtactcttggttttgcccaaaagttaataaatctatcaattttgccatgttgtttag

Basic information

species Glycine max
transcript GLYMA07G19190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G19190.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os08g27090.1 (Oryza sativa), 5'ss of exon 1
GGATAGACTTTTCTATCACAAAGTCTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatggacttaccaatttaattggtttattgttcatcacttaagttcttgtgcatgttattcttatgatcttatcacttaatttgtactcttggttttgcccaaaagttaataaatctatcaattttgccatgttgtttag
 ||  | || ||| | |||||  | ||  | || || |||||||||||||| || |||||||| |||||||||| | |   ||||||||| || |||   ||  ||| |  |  ||  ||  |  | |     |     ||     || || | || |   | || ||  |     || ||    | ||  |  |  ||| |||                                            
CGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGgtcggtaac-cgagctcccctctccactccccct----ctctctgtttcagcttttttctttttttttaatccatgctgatt-tgtgatgcgagcatttgatttct------------------------------------------

upper sequence: GLYMA07G19190.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G108008_T01 (Zea mays), 5'ss of exon 1
GGATAGACTTTTCTATCACAAAGTCTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatggacttaccaatttaattggtttattgttcatcacttaagttcttgtgcatgttattcttatgatcttatcacttaatttgtactcttggttttgcccaaaagttaataaatctatcaattttgccatgttgtttag
|||  | || ||| |  | ||  | ||  | || |||||||||||||||||||| |||||||| ||||| |||    ||  ||| |||||||| |||   ||  |||       ||      |   ||  |    ||  || |  || | | | |   ||     |   |   |||  |   |||   | |  | |  |  |                                              
GGACCGCCTCTTCCACTATAAGATGTACAACCGCTATGTCAAGCGCACCTCTAAGTTCATGGCACACGACGAGGCTGACTCCTGCAACATTGGCGACCGGgtcggtaattattgctgcatcgtcgtatccgccccttcctcgtt-ctgatgctgtaaggctgtgaaaattggcgatgcttagact-ggtgtcaatttgttat----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722802|gb|BW669396.1|BW669396
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|192329682|gb|FK023270.1|FK023270
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTGGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|298175080|gb|HO018075.1|HO018075
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|22928302|gb|BU545441.1|BU545441
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|298165396|gb|HO011445.1|HO011445
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|209699936|gb|BW652563.1|BW652563
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|298174285|gb|HO017621.1|HO017621
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTATG-CCTTTGAGCAAGCATAAACATTGGGTTGT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTA-GACCTTTGAGCAAGCATAAACATTGGGTTGT
EST: gi|298165210|gb|HO011259.1|HO011259
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|6481428|gb|AW200699.1|AW200699
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|192329681|gb|FK023269.1|FK023269
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|209722803|gb|BW669397.1|BW669397
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT
EST: gi|209699935|gb|BW652562.1|BW652562
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACATTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGACCTTTGAGCAAGCATAAACATTGGGTTGTT