1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTACCACCATGTCGGACGATGAAAGGGAGGAGAAGGAGTTGGATCTCTCTTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcctcactcttttaatgcctttgtggtctcaaattctatttgggttttggttatttcatacattggacacaatttttcctggaaccttgctgaagttcatttttttaaatttatattttttggttcaactaagatttgatgttttttttcttgtgtttatctatgattttacag
species | Glycine max |
transcript | GLYMA07G18500.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGEST: gi|192298267|gb|FG991729.1|FG991729
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
EST: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGEST: gi|192303104|gb|FG994222.1|FG994222
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
EST: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGEST: gi|254325005|gb|GR834430.1|GR834430
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
EST: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGEST: gi|192297830|gb|FG988328.1|FG988328
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
EST: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGGEST: gi|192334548|gb|FK024157.1|FK024157
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
EST: TTCTGCAGAAGTTGTAACCAAATACGAAACCGCGGCTGAGATCGTTAACA AGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
genomic: TTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcct ... gattttacagAGGCCTTGAAGCTAGTTATTTCAGAATGTAAACCAAAGGCGAAGATTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTACCACCATGTCGGACGATGAAAGGGAGGAGAAGGAGTTGGATCTCTCTTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcctcactcttttaatgcctttgtggtctcaaattctatttgggttttggttatttcatacattggacacaatttttcctggaaccttgctgaagttcatttttttaaatttatattttttggttcaactaagatttgatgttttttttcttgtgtttatctatgattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC