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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgctctttcttcaatgtaatctaaaaataattgttgtcctatattgtttgttgttagtgattttgatgtcaattgtgtttttagtcgatgttgaattgtatgttgtttttctgatttgggtgtggttaaattgggcgtttattttttcttag

Basic information

species Glycine max
transcript GLYMA07G14870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G14870.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G174757_T01 (Zea mays), 5'ss of exon 2
TCAAATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacacgctctttcttcaatgtaatctaaaaataattgttgtcctatattgtttgttgttagtgattttgatgtcaattgtgtttttagtcgatgttgaattgtatgttgtttttctgatttgggtgtggttaaattgggcgtttattttttcttag
 |||||||| |  || || ||  |||| || |||||||| ||  | || || ||  |||| ||    |||||||| ||||||||||| | ||||||||||||||      |  || ||   ||   | |     || || ||  |||  |   |  |  |  |   |   ||   | |||| ||||    ||     |  | |  |   | |                                               
CCAAATTGGAGCGATAAAAGAAAATGGTCTATGGATGCCTGTAAACCCAGAGACAAAGAAGACATACGGTTACTGTTTCATTGAGTATAGTACCCCTCAGgtattt----tacttgttggttgcgttttcttcttagttctta-cctgcacaat--gaagcaatgaacaatggc-ttaattatgttacctgt-----tcaattcatccctcgc----------------------------------------------