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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGGGGTTTCCAAAAATGCCAGTGAAGATGAAATCAAGAAGGCCTATAGAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactcacggtctttacttaaatacaatgcattttgattatcatatgcatatgccctgctcttctattaagatcagtattcactttttaaccatata...

Basic information

species Glycine max
transcript GLYMA07G14540.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193685047|gb|FK626963.1|FK626963
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|209709339|gb|BW678883.1|BW678883
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|254341868|gb|GR853005.1|GR853005
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTGGGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|193432506|gb|FK398238.1|FK398238
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|208239317|gb|GE037227.1|GE037227
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTG
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTG
EST: gi|207801424|gb|GD775510.1|GD775510
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAA
EST: gi|120491272|gb|EH219439.1|EH219439
EST:     TCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: TCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|193613961|gb|FK562717.1|FK562717
EST:     GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|209702366|gb|BW656341.1|BW656341
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|193334280|gb|FK299232.1|FK299232
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|18040211|gb|BM308505.1|BM308505
EST:     GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|298172387|gb|HO019427.1|HO019427
EST:     GATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: GATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: gi|193647664|gb|FK588019.1|FK588019
EST:     ATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG                         TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: ATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCGGGGTTTCCAAAAATGCCAGTGAAGATGAAATCAAGAAGGCCTATAGAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactcacggtctttacttaaatacaatgcattttgattatcatatgcatatgccctgctcttctattaagatcagtattcactttttaaccatata

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC