1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAACTTCCCTTGTACTGTGCAAGGAACTATATTTTGTCAAAGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACATgtaagagtggcctgtggagtgatattctttttacggaaaatttcatgaatggattgtgatttggtggcttgtttttgtctgcgaggatag
species | Glycine max |
transcript | GLYMA07G14250.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACAT AGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGACEST: gi|151400605|gb|EV270419.1|EV270419
genomic: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACATgtaagagtgg ... gcgaggatagAGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGAC
EST: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACAT AGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGACEST: gi|298176047|gb|HO015452.1|HO015452
genomic: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACATgtaagagtgg ... gcgaggatagAGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGAC
EST: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACAT AGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGAC
genomic: AGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACATgtaagagtgg ... gcgaggatagAGTGCAGGATAGCTGCATGTTGCAGCATTCAGAGAAAGCATTGAGGAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACTTCCCTTGTACTGTGCAAGGAACTATATTTTGTCAAAGGAAGCAATTAACTCATGGATGCAAAGACCAAAAATCAAAGGATTACATgtaagagtggcctgtggagtgatattctttttacggaaaatttcatgaatggattgtgatttggtggcttgtttttgtctgcgaggatag
- - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG