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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCTGACATTTTTGCAGCACGCCCTGGATTAGAGCCTTTTGGAACTGCTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctttatttgatacccttttatgtatgagtttagtttccatgcactaataatataaaggtttttactcaatctataagagaccatcgtaagtat...

Basic information

species Glycine max
transcript GLYMA07G10930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171695|gb|HO021287.1|HO021287
EST:     CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG                         ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: gi|9986003|gb|BE660009.1|BE660009
EST:     CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG                         ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: gi|298192133|gb|HO036215.1|HO036215
EST:     CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG                         ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: gi|298173103|gb|HO020087.1|HO020087
EST:     CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG                         ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC