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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagattcctttcaaaattctgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag

Basic information

species Glycine max
transcript GLYMA07G09420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12680.1 (Oryza sativa), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacc--tctggttttagctttctatcacaagattcctttcaaaattctgtttagttggtccatcttttctg-ctgaaagtgggctaggcaccaac-taccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
|| ||||| || || |||||||| || |||||  |||||  | ||||  ||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||| ||      ||   | || ||||  |       |||| |||   | ||| | ||   ||| ||  |   || || |||||||    |  | ||  ||| ||                                                              
AAACATCTCGTCTCCTTGGTTGGTTATTGCATTTCTGGGGGCAAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACACATTGGAATTCCACTTGCACGgtatgctttgttcatatgtttgcttctttatctgtgattactt---atattttattattttgctcagttacttttgtctgaaagatctcacgacaaaaacata--------------------------------------------------------------

upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g12720.1 (Oryza sativa), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagattcctttcaaaattctgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
|||||||||||  | |||||||| || |||||  ||||     ||||| ||||||| ||||| | |||||| ||||||||||||||  |||| |||||||||     |   |  | | | ||   | ||||  | ||| |     | |||    |  |   |  |   ||| || | |||    | || | | ||   ||  ||||                                                       
AAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGgtacactctcttcttgtgatctcattctcacc-gcttcttgctttatttcaaaatcctctatgtac--tttgtgtttaaaa---gataagtagcatgaacagatat-------------------------------------------------------

upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G416308_T01 (Zea mays), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagattcctttcaaaattctgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
|| || ||||| ||||||||||| || |||||  ||||   | ||||||||||||| ||||| ||||| ||||| ||||||||||||||||| || |||||| ||| || ||            |   || |   || || || |   |||||  | |  |  ||| |||  |  |   | | || |   | |     ||||                                                           
AAACACCTTGTGTCTTTGGTTGGCTATTGCATTTCTGGAGGCAAGAGGCTGCTTGTCTATGAGTTTGTCCCCAATAACACATTGGAATTCCACTTACATGgtatgtccccctcccccc--tcaacccccatatattttctctccattatctgtg-aatctgcacatatttgattttcctacttggtttctctctggg-accatg---------------------------------------------------------

upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055678_T02 (Zea mays), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagattcctttcaaaattc-tgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
|| |||||||| ||||||||||| || |||||  ||||   | ||||| ||||||| ||||| || || ||||||||||||||||||||||| || |||||  |||||| |   ||||   | |  || |          | |||    | |||||  ||  | | |  |||||  |  |    | |  | | |||  |     |                                                         
AAACATCTTGTGTCTTTGGTTGGCTATTGCATTTCTGGAGGCAAGAGGTTGCTTGTCTATGAGTTCGTCCCCAACAACACATTGGAATTCCACTTACATGgcatgtacccccatttttttatcttcattatctatgattctgcaatccacatgtttgatttttacttagtttctctttga----gaccggtcgccatgt-ttggt---------------------------------------------------------

upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G170035_T01 (Zea mays), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagattcctttcaaaattctgttta-gttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
||||||||||| || |||||||| || |||||  ||||  |||| ||| |||| || || || |||||||| ||||| |||||||||||||| || |||||| |||   |||  |  |   | |  | |  ||  || ||| |    |    || |    | |   | |  |||    || |     |||  |  |  | || || | ||                                                    
AAGCATCTTGTATCCTTGGTTGGCTATTGCATTTCTGGAGCCCACAGGTTGCTCGTCTACGAGTTTGTTCCAAACAATACATTGGAATTCCACTTACATGgtatgt---tctcttcctgtttctgcaccgtaa--ttacttcc----tctcattcataacgctttgtatagtctctcaaaggcaccttagaaatta--ttcctatgtaata---------------------------------------------------

upper sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g03880.t01 (Vitis vinifera), 5'ss of exon 2
AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagatt---cctttca--aaattctgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcag
|| ||||||||  | || | |||||| ||||||||||| || || || |||||||||||||| |||||||| |||||||| ||||| || ||||| ||||||   |     |  | |||     ||||   ||  ||   ||||  |  || |  ||||  | ||     | | ||    |     || ||||     ||| ||                                                              
AAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaatttggattattattactgcactattttaatttttatccttctaggaagtcatgttaggatgaaaagtgtcttgcttt-----tgtgctacatttcaagtag-------------------------------------------------------------