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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCGCTGACACCAATATTgtaagcaactcaaacacaaacgactagttagttagttagttacaatctctagctaatttaattaaccagttattgaaggttttaaaaaatgatctgtaat...

Basic information

species Glycine max
transcript GLYMA07G05660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05660.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 2
------TCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCGCTGACACCAATATTgtaagcaactcaaacacaaacgactagttagttagtt---agttacaatctctagcta-atttaattaaccagttattgaaggttttaaaaaatgatctgtaat
      |||||| ||||| |||||  |||||||||||||||| ||||| || |||||||||||||| |||||||| || || ||   ||||  ||| ||| |  |    ||| | |  |      | |  |||||  || | |   | || || | |  ||     ||  ||| |||    |     |||| |||    | | ||| |  
GAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAA---CACCAATGATACCCAGgtc---agccatttgatttttca-gcttagtt--ttggcttgaaatttcagtttggagtagtgttccattgaccttacaaactgggttataatgg-taacctgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337400|gb|BI498056.1|BI498056
EST:     TCATGCATGAATACAGACTAGACGACAACAACACCGCTGACACCAATATT                         GTGTCCAATGTGATGGGGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGT
genomic: TCATGCATGAATACAGACTAGACGACAACAACACCGCTGACACCAATATTgtaagcaact ... ggaaacttagGTGTCCAATGTGATGGGGGATGCTGCTCAGGAAGAAGGGTGGGTGGTGTGT