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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTATGAACTCACCATCCCAGCTAAATTGGAATGGTGATGATCCTTGTGGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgcaatctctctttcactttatatgtcttgattgttattgcttttggtgctgtgatttctgatgattattcatttattttccacttcttatcag

Basic information

species Glycine max
transcript GLYMA07G05230.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193407175|gb|FK371066.1|FK371066
EST:     TCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: TCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193617299|gb|FK567517.1|FK567517
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193715037|gb|FK650202.1|FK650202
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|213590529|gb|DB973302.1|DB973302
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193634847|gb|FK585266.1|FK585266
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193526400|gb|FK483758.1|FK483758
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTT
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTT
EST: gi|193473755|gb|FK439696.1|FK439696
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|207737720|gb|GD716072.1|GD716072
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTA
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTA
EST: gi|5606215|gb|AI900313.1|AI900313
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193708511|gb|FK644959.1|FK644959
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
EST: gi|193679135|gb|FK620629.1|FK620629
EST:     GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCGCAGAGAT                         TAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC
genomic: GGACAGTCGTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATgtgaagtcgc ... ttcttatcagTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAACC