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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGTCACCAGAACTTCCGCTTTGGAGTACGAAGACTTCAATTCCGCCAAGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcactcacgaactctcgcacgtgcgtgcgtgcgtgctttcattcactcacatcatcacttcctaaactcagttgattcgcttttcgcttcgcag

Basic information

species Glycine max
transcript GLYMA07G05070.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014278|gb|CX701020.1|CX701020
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|11413537|gb|BF425548.1|BF425548
EST:     ATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: ATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|58017505|gb|CX704247.1|CX704247
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
EST: gi|58017653|gb|CX704395.1|CX704395
EST:     AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAG                         GCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC
genomic: AGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGgtaaatcact ... cgcttcgcagGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGC