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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgattcatttcatgccactacttcattcgttctagtaaagtttgcattttaagttgttttagttttcggggtttttaatgtttcggtgttacccag

Basic information

species Glycine max
transcript GLYMA07G04830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165347|gb|HO011396.1|HO011396
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCGTCTCTGCAGATAACTAAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|193413001|gb|FK380808.1|FK380808
EST:     CTGAATTTGGAG                         GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|192323993|gb|FK018684.1|FK018684
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298194118|gb|HO040766.1|HO040766
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATCTGGAG                         GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298184473|gb|HO029686.1|HO029686
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298163373|gb|HO012106.1|HO012106
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|192318066|gb|FK007180.1|FK007180
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298179745|gb|HO024960.1|HO024960
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCGTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|192318065|gb|FK007179.1|FK007179
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298168411|gb|HO009341.1|HO009341
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|192325825|gb|FK018047.1|FK018047
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
EST: gi|298177341|gb|HO027122.1|HO027122
EST:     CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAG                         GTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT
genomic: CAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgat ... tgttacccagGTTTGTCCTCTGCCTCTCTGCAGATAACTGAGTCGGAAAATGGAGCAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGATGATTTGATGCCACCACCGGAGAGACCCATCTTCAGCTTCAATTCCAAGCAAGAGTTAAGCAAGTGGCATTTGTATTCTGATTCTGAATTTGGAGgtggggtgattcatttcatgccactacttcattcgttctagtaaagtttgcattttaagttgttttagttttcggggtttttaatgtttcggtgttacccag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG