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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcgattctatcaaatgcattccttactctcatctgtgccctatattttagaccaaaactggggggttctgttagtaattagcttatttactct...

Basic information

species Glycine max
transcript GLYMA07G03680.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126582|gb|BG791020.1|BG791020
EST:     TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|31306843|gb|CD392046.1|CD392046
EST:     ATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: ATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|192330937|gb|FK023110.1|FK023110
EST:     TGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|120496630|gb|EH224797.1|EH224797
EST:     TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|31308540|gb|CD393743.1|CD393743
EST:     TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|31476276|gb|CD418304.1|CD418304
EST:     TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
EST: gi|58024911|gb|CX711652.1|CX711652
EST:     TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG                         GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG
genomic: TGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcg ... ttttggttagGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGgtctctctcgattctatcaaatgcattccttactctcatctgtgccctatattttagaccaaaactggggggttctgttagtaattagcttatttactct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggt