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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAATgtaagaatctactactctgtttttttattgggtttgtaattaatgatgcccaatccaaatattcaatcttttatttgtatagttttggtaaattgttcttctacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcag

Basic information

species Glycine max
transcript GLYMA07G01950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 2
---TATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAATgtaagaat-ctactact-ctgtttttttattgggtttgtaattaatgatgcccaatccaaatattcaatcttttatttgtatagttttggtaaattgttcttctacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcag
    |||||||||||  ||||||| |||||||| |||||||||||||| ||||| || || ||| |||||||  |||| || |||||||| |   | | |||||| || || ||||| || |  | | || |||    || |  ||||| ||  | |     ||| ||   ||||| |   | ||| |  |      ||  |  | |  |  |  ||   | ||| | | | |                            
GGCAATGAACAAGCTCTTGATGGAGGAGAATGACAGGTTGCAGAAGCAAGTGTCACAGCTGGTCCATGAAAACAGCTACTTCCGTCAACATA---CTCCAAATgtgaggattctactcctgcaatatcttcatttttcttatc-ttaataatcacta----gaatgttt--tctttaa---gaataataatatccttttaatggtatgtgtatcgatttgtctttttttttcag---------------------------

upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 2
---TATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAATgtaagaatctactactctgtttttttattgggtttgtaatta-atgatgcccaatccaaatattcaatcttttatttgtatagttttggtaaatt--gttcttctacgctttcatagatttttctatgtgaaaattatagaatggcgctttctctgcag
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| || || ||||| |||   || || || |||| || ||  | || ||| |      || |  |   | ||  |  |  ||     | |||  | || | ||| | |  ||||      |    |||||||                                                      
CGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAGAATGGCTACTTCCGCCAACATACC---CAGAACgtgagaa-ctccttatatgctttctc-----gtctccagccatattgtctctgatgatttttttccgttttctttttctttttttttaaaggttctgattcttctg-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663237|gb|BI700608.1|BI700608
EST:     CTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAAT                         ACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGT
genomic: CTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCACCCAAAATgtaagaatct ... ttctctgcagACTAAGCAGCAGCCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGT