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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattttgtttgtaattcttgttacactgttttttattggattttgtaattttgttattaatgatgcccaatttgaaagactccaaatttgaatct...

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 2
TGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattttgtt--tgtaat-tcttgttacactgttttttattggattttgtaattttgttattaatgatgcccaa---tttgaaagactccaaatttgaatct---------------
 || |||||||||||  ||||||| |||||||| |||||||||||||| ||||| || || ||| |||||||  |||| || |||||||| || |  | ||| || ||| |  |  || ||| ||||  |      | | ||| |      |  ||| || |  ||||  ||    |     ||  ||   |     | |  || |               
GGCAATGAACAAGCTCTTGATGGAGGAGAATGACAGGTTGCAGAAGCAAGTGTCACAGCTGGTCCATGAAAACAGCTACTTCCGTCAACATACTCCAAATgtgaggattctactcctgcaatatcttcatttttcttatcttaataatcactagaatgttttctttaagaataataatatccttttaatggtatgtgtatcgatttgtctttttttttcag

upper sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 2
TGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattttgtttgtaatt-cttgttac--actgttttttattggattttgtaattttgttattaatgatgcccaatttgaaagactccaaatttgaatct-
 || |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||| || || ||||| |||||||  || |||| |   | | |  || || ||  |   |  | || | |  |||  | |  ||  ||| ||  |  |      ||| ||||  ||  | | |   ||| 
CGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAGAATGGCTACTTCCGCCAACATACCCAGAACgtgagaactccttatatgctttctcgtctccagccatattgtctctgatgatttttttccgtt-ttctttttctttttttttaaaggttctgattct---tctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782405|gb|GD753332.1|GD753332
EST:     TGTCTCAACACGTCTGTGAAAATGGCTATTTTCGTCAACACACCCAGATT                         ACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
genomic: TGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattt ... ttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
EST: gi|207750111|gb|GD726065.1|GD726065
EST:     TGTCTCAACACGTCTGTGAAAATGGCTATTTTCGTCAACACACCCAGATT                         ACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT
genomic: TGTCTCAACTCGTCTATGAAAATGGCTATTTTCGTCAACACACCCAGATTgtaagaattt ... ttatttgcagACTACGCAGGCAACCAAAGACACAAACTGTGAATCAGTTGTGACGAGTGGT