1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcag
species | Glycine max |
transcript | GLYMA07G01440.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGATCGTGGTGGTCAAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGAEST: gi|207824963|gb|GD797179.1|GD797179
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGAEST: gi|208092864|gb|GD886793.1|GD886793
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGAEST: gi|208259705|gb|GE059735.1|GE059735
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
EST: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGAT CATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
genomic: GTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaa ... taacttgcagCATCACGGATCAAGAAGGGACTTGGAGAGGATGGACTATTCTATTAGTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG