1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcatcctccattctctttatgcctttttttttgtttcatttcgccaggcattcttcatcaatacactccatttatacttggttttgttgtattc...
species | Glycine max |
transcript | GLYMA07G00420.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|213594416|gb|DB970010.1|DB970010
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|15285225|gb|BI469116.1|BI469116
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|37996482|gb|CF808071.1|CF808071
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|37997640|gb|CF809229.1|CF809229
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|19269340|gb|BM885596.1|BM885596
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|5509172|gb|AI855730.1|AI855730
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTTAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|6912974|gb|AW394562.1|AW394562
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|151403300|gb|EV273110.1|EV273110
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|213617885|gb|DB957366.1|DB957366
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|298197166|gb|HO041909.1|HO041909
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|18732952|gb|BM527342.1|BM527342
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|213599336|gb|DB972278.1|DB972278
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|298180890|gb|HO022329.1|HO022329
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGCTGTTGACATTGACAAAAATATTGACATTEST: gi|7588108|gb|AW703911.1|AW703911
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|37997219|gb|CF808808.1|CF808808
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|16281256|gb|BI944393.1|BI944393
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|7458604|gb|AW666054.1|AW666054
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|213587656|gb|DB971379.1|DB971379
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|213618287|gb|DB973057.1|DB973057
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|120534038|gb|EH262171.1|EH262171
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|24205256|gb|BU964509.1|BU964509
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|18039807|gb|BM308101.1|BM308101
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|7478542|gb|AW666307.1|AW666307
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|18041169|gb|BM309454.1|BM309454
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|37995944|gb|CF807533.1|CF807533
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|19052933|gb|BM731600.1|BM731600
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATTEST: gi|37995965|gb|CF807554.1|CF807554
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
EST: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAG GTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
genomic: ATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcat ... acttcttcagGTCCACCCAGAAGGAAAATATGTTGTTGACATTGACAAAAATATTGACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGATGCTGCGCGAAGAATTACAGCTTCTGCAGGAACCCGGCTCTTATGTCGGTGAAGTTGTCAAAGTAATGGGCAAGAACAAAGTCCTTGTCAAGgtcacctcatcctccattctctttatgcctttttttttgtttcatttcgccaggcattcttcatcaatacactccatttatacttggttttgttgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC