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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATGATGGATCATGACTTGGAGACCGCTGCTTTGGGGGCTTACCAGGACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctttccttcctttcaatacggatcaagtcgccaccgcaaccacttcgccatatcaacaaacgcctcttccttcttactcctctcctccttcttctcttctttgtatatcttatgcttgccttcttccgtttttctgcag

Basic information

species Glycine max
transcript GLYMA07G00350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 2
GTCAATGATGGATCATGACTTGGAGACCGCTGCTTTGGGGGCTTACCAGGACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctttccttcctttcaatacggatcaagtcgccaccgcaaccacttcgccatatcaacaaacgcctcttccttcttactcctctcctccttcttctcttctttgtatatcttatgcttgccttcttccgtttttctgcag
   ||  |||||| | ||  ||||||  | |||||||||| ||||||| || ||||| || |  |||||||||||||| | |||| ||||||||||  |||| ||  |  |   || | ||  |   | | ||   |   || ||   ||||    || |    ||    ||   |||| ||  | ||        |  | | ||                                         
TGTAACTATGGATGACGATGTGGAGAGTGGTGCTTTGGGGCCTTACCAAGATAAGCCAAGGATTTTCCCCAACATGCGGAGTAAATCTTACACCCCATTGgtaaggacactgtatc-tgtctttgtag-ttaacatgtttcctcagttactt----atgtttggaatattcttaccctttttggttcttggggtaatactatattg----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208072610|gb|GD871956.1|GD871956
EST:     ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG                         ATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTT
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTT
EST: gi|213597643|gb|DB962153.1|DB962153
EST:     ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG                         ATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTG
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTACTTGGTATCAATGTTCGTGTCCTCTTCATTCTTTTG
EST: gi|193712070|gb|FK648813.1|FK648813
EST:     ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTG                         ATATTTCGTATTTTAC
genomic: ACAAGCCTAGAACCTTCCCCAACATGCGCACTAAACCTTACACCCCTCTGgtcagttctt ... ttttctgcagATATTTCGTATTTTAC