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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGTCAGAAGGGGCGCACACCACCTTGCGGCACTGCAGACCTCTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactcactactcactacattagtttatcatcgtgtttctcttttattaattccatctcataaataacaaaactaaatccatttgattccagtttt...

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213614592|gb|DB969141.1|DB969141
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: gi|209727472|gb|BW663733.1|BW663733
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GNNNNNNNGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTT-GTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGA
EST: gi|33390028|gb|CA853235.1|CA853235
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: gi|33388879|gb|CA852086.1|CA852086
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: gi|209707634|gb|BW683427.1|BW683427
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
EST: gi|209724227|gb|BW666592.1|BW666592
EST:     GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTG                         GTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA
genomic: GCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactc ... aatattgcagGTTTTTTGTATGTATATTACAGGAAATCTTGAATCAGTATTTCCAGAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGTCAGAAGGGGCGCACACCACCTTGCGGCACTGCAGACCTCTGATGGCCATTGGCCTGCTCAAATTGCAGGTCCTCTCTTCTTTCTTCCTCCTTTGgtaagtactcactactcactacattagtttatcatcgtgtttctcttttattaattccatctcataaataacaaaactaaatccatttgattccagtttt

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