Sequence
atgc intronic sequence ATGC exonic sequenceATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgcattatagcaatttgtctcaatttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg...
Basic information
species | Glycine max |
transcript | GLYMA06G47850.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G47850.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G56280.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttg-----cattatagcaatttgtctcaatttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg
|||||||||||||||| | ||||| || ||||| ||||| || || || |||||||| |||||||| ||||||||||| || |||||||| ||| | | ||| | ||| |||| | || | || || |||| | || || | | || | |
ATAAGAAGGTGTTCCCTGATTTCTATATTCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGCTgtgagtccaatgctctctctagtatttttgtataattgagatttggtctctaaaagtgtggtttttgtgtctgctcttgg-tgacag------------------
upper sequence: GLYMA06G47850.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G26430.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgcattatagcaatttgtctcaatttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg
|||||||||||||||| |||||||| || |||| |||||||| || || ||||| || ||||| ||||||||||| ||||||||||| ||| | | |||| | | | || | || | | | | | ||| |||| | | | || || | |||| | | |
ATAAGAAGGTGTTCCCTGACTTCTACGTATTGGGATGGTATTCTACGGGAAGTGACGCTACCGAATCTGATATGCATATCCACAAAGCTgtgagt----agtgtagc------tttaatgtttaatataaatttaattgaatt--tagg-attctcattgtactgatttgttgaggttttcatctacag
upper sequence: GLYMA06G47850.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0015g01950.t01 (Vitis vinifera), 5'ss of exon 2
ATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgcattatagcaatttgtctcaat-ttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg
|||||||||| || ||| |||| || ||||| || ||||| || || || |||||||| | |||||||||||||||||||| ||||||||||||| ||| || | | || | || |||| || | | | || | | ||||| | ||| | | ||| | | | |
ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCTgtaagttcacatcatcgttcatagttttaagattaaacacgttccaagtttttttctttttttggtttagattattaatgataataaatgagatgatact-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8670223|gb|BE191330.1|BE191330EST: ATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCT TTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATC
genomic: ATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgc ... gctgtaacagTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCTgtaagtttgcattatagcaatttgtctcaatttaagcatgattgtgaatagattggtaggtaggtttggtttaggatcatgagggaattttagtaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA