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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAACAAAGAGCGACAGCTACTTTTGGACCTAGACCTGGACCTGCTGGGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcattatctttgttttcttatttgtattatatgtgtgttgtatgttgtatttattgataattaggccatgttaattgttaatgacattgagtatt...

Basic information

species Glycine max
transcript GLYMA06G47830.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309988|gb|FK002512.1|FK002512
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|209715174|gb|BW665651.1|BW665651
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|10843162|gb|BF066475.1|BF066475
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|209712540|gb|BW684130.1|BW684130
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|193523866|gb|FK477887.1|FK477887
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|10710560|gb|BF010278.1|BF010278
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|10709138|gb|BF008862.1|BF008862
EST:     GGCCTCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|254335876|gb|GR847404.1|GR847404
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|208084739|gb|GD882715.1|GD882715
EST:     GCATCCAGGCAACCCTTTTGATTCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGNTCCATCGTTC
genomic: GCATCCAGGCAACCCTTTTGAT-CTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|5605985|gb|AI900083.1|AI900083
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
EST: gi|151407493|gb|EV277308.1|EV277308
EST:     GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAAT                         GATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC
genomic: GGCATCCAGGCAACCCTTTTGATCTCTCAGCAATGTCTGGTCTGCTCAATgtaaatcatt ... aaatgcatagGATCCAAGTATCAAGGAATTGGCTGAACAGATAGCAAAAGATCCATCGTTC