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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTTTCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaatctccttctctagatgtaataataataatgataatcagaataataacaataataattacgttattgttatttgttggattatttttccca...

Basic information

species Glycine max
transcript GLYMA06G47830.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843162|gb|BF066475.1|BF066475
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|151407493|gb|EV277308.1|EV277308
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|192309988|gb|FK002512.1|FK002512
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|208084739|gb|GD882715.1|GD882715
EST:     AAAGGATTTCCCTGCNG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: AAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|254335876|gb|GR847404.1|GR847404
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
EST: gi|209715174|gb|BW665651.1|BW665651
EST:     TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT
genomic: TCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcttagATGACAAAGCTGGAACAGAAGAGAGTAAAACATCCAAAGATGAGACTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATTTTCTATTTTCTCCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaatctccttctctagatgtaataataataatgataatcagaataataacaataataattacgttattgttatttgttggattatttttccca

- - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc