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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCTTCACAGAGAATGAGGCAGAAACTTGAAGAAGTAAATGTGGCTGCTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAGgttttttccagtccttttctgtaacaagtaattttgtgtttgcttatactattgtttccagtacttaatgtttccttagaagattggatggtattatgcc...

Basic information

species Glycine max
transcript GLYMA06G47800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164806|gb|HO010803.1|HO010803
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAGgttttttcca ... ataattacagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|151406813|gb|EV276628.1|EV276628
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAGgttttttcca ... ataattacagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298176121|gb|HO015526.1|HO015526
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAGgttttttcca ... ataattacagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|192298211|gb|FG991701.1|FG991701
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTACACGCTCCAGgttttttcca ... ataattacagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG