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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtcttttgatttagtgtccagattttcaattaggtgtttttcttctcttgttattaccttgatgatctgatcctgaaacttctgcag

Basic information

species Glycine max
transcript GLYMA06G47630.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 5'ss of exon 2
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatg--taatgctgtcttttgatttagtgtccagattttcaattaggtgtttttcttctcttgttattaccttgatgatctgatcctgaaacttctgcag
 ||   ||| | ||| || ||| | ||| |||| || ||||||||||||||||||||||| |||||||||||||||||   |||  | ||||| ||| | ||||   |  |    |||| || | |   ||||  ||| | |  |  |||    | || ||| |   ||   |  ||  |||  ||   |           
TAATCTTGCCAGAGGTAAAAGATTGGCACTGTTCCTTGATTATGATGGAACTCTTTCACCGATTGTGGACAATCCTGAAAATGCAGTAATGTCTGACGAGgtattctttttctcctcttatgttctttagtcctcattatta--tcagtgaaaat-ttatctggcagttttgtaaatattctattcgacag----------

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G178546_T02 (Zea mays), 5'ss of exon 3
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgct---gtctttt--gatttagt-gtccagattttcaattaggtgtttttcttctcttgttattaccttgatgatctgatcctgaaacttctgcag
  |   |||     | || ||  | ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||   ||| || ||||| ||  | ||||||  | |    ||| |||   | ||||  ||||||   | |||||   |   ||   | |||    |||   || |        | ||| |          
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgttttccctaagtccttttaaaattagcagtccag---tgcaatt---tcagttcgctttctaaacattgtattcacagatgcgtgctgcag---------

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G178546_T01 (Zea mays), 5'ss of exon 3
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtcttttgatttagtgtccagattttcaattaggtgtt-tttcttctcttgttattaccttgatgatctgatcctgaaacttctgcag
  |   |||     | || ||  | ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||   ||| || ||||| ||  | ||||||     | ||  |   |    | |  | |||  || |   |||   ||||   ||   || | | | |  |  ||  |                 
TGATCTTGCTGGGAGTAAAAGGTTGGCATTGTTTCTTGACTATGACGGAACACTTTCACCGATTGTGGACAATCCTGAAAATGCATTAATGTCTGATGAGgtatgt-----tttccctaagtcc--ttttaaaattagcagtccagtgcaatttcagttcgctttctaaacattgtattcacag----------------

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G51460.2 (Arabidopsis thaliana), 5'ss of exon 2
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtcttttgatttagtgtccagattttcaattaggtgtttttcttctcttgttattaccttga-tgatctgatcctgaaacttctgcag------
 |  | ||||||||| || ||||||||||||||||| |||||||| || || ||||| || ||||| ||  | ||||| ||||| | |||||||     |||| ||  |    | |  |   |||   | ||  |  | ||  || |    ||  |   |  |  | |   ||| | || || | |      || | ||       
GAGTTTTGCAAAAGGCAAAAGAATAGCATTGTTTCTTGATTATGACGGGACACTTTCGCCTATTGTTGAGGAACCTGATTGTGCATACATGTCAAGTGCTgtaagtttttaactttcctctattaa-attcaattgctaaaacagatcaaatttgtgattcatcctcataatgaattatatggttcacgcctttttacatgtttag

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 2
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtctt------ttgatttagtgtccagattttcaattaggtgtttttcttctcttgttattaccttgatgatctgatc----ctgaaacttctgcag----------
 |||| ||| || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||| | || |||||||| ||   |||  | ||| |||| |       || || ||   |  ||| | | ||     | ||| | |||| | |  |  |  || |   |||  |     |||| | |  ||             
GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgag-aatcctgtttgcttgagttcatctataattgagaatgttaagattctttttattttctttggaaaagattttcactttcttttttgcactgatattcttgtgcatgttggcag

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S32_182V6.1 (Physcomitrella patens), 5'ss of exon 3
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtcttttgatttagtgtccagattttcaattag--gtgtttttcttctcttgttattaccttg-atgatctgatcctgaaacttctgcag--
|||     |  |    |||  ||| |   | || || |||||||| ||||| |||||||||||||||||  |||||||  | ||||||||||||| | | ||  |||      | |||   | |  |||  ||   |  ||   |  ||  |      |  |   |  ||||  |     | | |   |  |  ||| | |   
CAAGCAGTCGCACAACAAGCAAATCGTGGTATTCCTTGATTATGACGGAACACTTTCACCCATTGTGGAGGATCCTGAACGGGCTTTCATGTCAGCCGAGgtcagta----catttttaagtattttgttaagcgatggaaagggtagtactgacggccattcagtgatacccggtgctttttaaatgttcatattcagtaaat

upper sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S333_42V6.1 (Physcomitrella patens), 5'ss of exon 2
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgt----atgtaatgctgtcttttg--atttagtgtccagattttcaa--ttaggtgtttttcttctcttgttattaccttgatgatctgatcc-tgaaacttctgcag----------------------------------
 ||   |||      ||||  ||| |   | ||||| || ||||||||||| |||||||||||||||||  |||| ||  | || || ||||||| | | ||    | ||  ||  || |||||  ||     |   | |||| ||   |          |      | | |  |  ||  ||||  | | || || | |   | |                                    
TAAGCATGCGGTTAAAAAGCAAATTGTGGTATTTCTTGACTATGATGGAACACTTTCACCCATTGTGGAGGATCCGGAGCGGGCCTTTATGTCAGCCGAGgtcagtacgtcttgtagtgttttggaatgagaaggaaacatttccacgctcgatcagcactgaaagatagatgatttctcaatgaggtcaaccgtgtagccggtactaaaagtacttttttattttattttatgctcaacag