Sequence
atgc intronic sequence ATGC exonic sequenceGGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGgtgagcgttatctttcttttgaatgccatgctatggttttttagtttcaagtgtttccccttagtaaatatccttaacctgaatgataactataag
Basic information
species | Glycine max |
transcript | GLYMA06G47220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G47220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ29498 (Selaginella moellendorffii), 5'ss of exon 1
GGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGgtgagcgttatctttcttttgaatgccatgctatggttttttagtttcaagtgtttccccttagtaaatatccttaacctgaatgataactataag
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GAGGAGCTTGGATCTCGTCGTGGAGAAGACTGTGGAGAGGCGGCAGAGGAGGATGATCAAGAACAGGGAGTCGGCGGCGCGGTCACGAGCGAGGAAGCAAgtaagtcgcacttttgaccaaagaggctttttttctactcttttttccttgt-tttttttgcag--------------------------------
upper sequence: GLYMA06G47220.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ28072 (Selaginella moellendorffii), 5'ss of exon 1
GGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGgtgagcgttatctttcttttgaatgccatgctatggttttttagtttcaagtgtttccccttagtaaatatccttaacctgaatgataactataag
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GAGGAGCTTGGATCTCGTCGTGGAGAAGACTGTGGAGAGGCGGCAGAGGAGGATGATCAAGAACAGGGAGTCGGCGGCGCGGTCACGAGCGAGGAAGCAAgtaag-----tcgcacttttga---ccaag--gaggcttttt---tcctacccttttttctttgttt-tacttgcag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193682320|gb|FK624132.1|FK624132EST: GGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAG GCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTTTGGAAGAGGAAAAC
genomic: GGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGgtgagcgtta ... taactataagGCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTTTGGAAGAGGAAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCACGTCAGAGGATATGGTAGAGAAGACCGTTGAGAGGAGGCAGAAGAGGATGATCAAGAATCGGGAATCTGCTGCCCGTTCTAGAGCAAGGAAACAGgtgagcgttatctttcttttgaatgccatgctatggttttttagtttcaagtgtttccccttagtaaatatccttaacctgaatgataactataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA