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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCATTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattgtgtactgtgtttatttcttgaatctttgatgcattgaatactctatttttagctcatttctcatattctacctgtctgaaattag

Basic information

species Glycine max
transcript GLYMA06G47010.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G47010.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 2
ATTCGCATTCGTTTAAGATTGGTCCTCTTAGCTGTACGGTGTGCCAAGCACTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattgtgtactgtgtttatttcttgaatctttgatgcattgaatactct----atttttagctcatttctcatatt--ctacctgtctgaaattag------
|||| ||  | |||||| | |||||||| ||||||| | | |||||||| ||| | ||||| | ||||||||||||||||||||| ||||| |  |||||||| | |            || |    || | | | |  ||  | || || |||    |||||    |  || || |||||  |||| | | | |  | |       
ATTCTCAAACTTTTAAGCTGGGTCCTCTCAGCTGTATGATATGCCAAGCGCTTCTCTTTGAAAGCAGCAAATGTGTGCCTTGTTCCCATGTATATTGCAAgtaggcagacaaaggcaacttgaacctttaagtttgttttgtgtggattattcttatcattttgcagtttttactaatattacctacatttttaatctgaaaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703747|gb|BW656880.1|BW656880
EST:     CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAA                         AGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
genomic: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattg ... ctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
EST: gi|192323561|gb|FK015327.1|FK015327
EST:     CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAA                         AGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT
genomic: CTTTTATTTGACACCAGCAAATGTGTGCCTTGTTCTCATGTTTTCTGCAAgtatgtattg ... ctgaaattagAGCATGCATATTGCGCTTCAAGGACTGCCCGTTATGTGGGGCTGATATTGT