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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCTCAACCAAGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGgttagttccataatttgatgcaccaatcgtatatatttagactatgtttgtttcatctaattaatttttttgaaaataatcaattttgttttaaatttttcttgacaaaagaatattatttcttcgatcaaaaagaactaaatacattggcaaatgattaagttgcttacatcaagtgtttactattgtacacag

Basic information

species Glycine max
transcript GLYMA06G46740.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723499|gb|BW669502.1|BW669502
EST:     AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG                         GCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
genomic: AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGgttagttcca ... ttgtacacagGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
EST: gi|19453389|gb|BM954799.1|BM954799
EST:     AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG                         GCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
genomic: AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGgttagttcca ... ttgtacacagGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
EST: gi|213594520|gb|DB973677.1|DB973677
EST:     AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG                         GCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCC-
genomic: AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGgttagttcca ... ttgtacacagGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
EST: gi|209710126|gb|BW681066.1|BW681066
EST:     AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGG                         GCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC
genomic: AGGATAACATTCCCAATTTTCATGCAAATTTTCATCCTAGCTCTACTTGGgttagttcca ... ttgtacacagGCCAGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCC