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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattacaatatatagatagagaactagtttatgttttcgtgttttctaccattgaaagaacttcagtgcatctacttttgaatatacaattatat...

Basic information

species Glycine max
transcript GLYMA06G42890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 5'ss of exon 2
ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattacaatatatagatagagaactagt--ttatgttttcgtgttt-tctaccattgaaagaacttcagtgcatctacttttgaatatacaattatat
  ||||||||  | ||||| || ||||| |||||||| || |||||||| |||| ||| ||||||||||||||||   || |||||||||  | |||| | |   |  ||   || |  |    |||   | ||  | ||  | ||  || |  |   |  || | | || ||         |    
TCAATGCTGGATCGAACAAGGCTGCATCAAGCGGCACCTCCTTGAACACAAAGAAGCTAGATGATGATACTGAGAACTTATCTCgtgagttattcaatctctttctcaaggtgtattgatctgatttctatattgatatagtaatgttagtatctatctctatatcccttggacacagtgggtg---

upper sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 2
ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattac--aatatatagatagagaactagttta----tgttttcgtgttttctaccattgaaagaacttcagtgcatctacttttgaatatacaattatat
 | ||||||||||||||||||| || |||||| |||| || || ||||| | || ||| ||||| || || |||| ||| ||||||||||||  |    | | |   |  | || | |  |     | | || |||||| ||   | | |  ||| |  |    ||  | |||| | | |||  |     
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttacttatggaaatataa-aaattcattttttattttacttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396561|gb|AI495558.1|AI495558
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|31310925|gb|CD396128.1|CD396128
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213589594|gb|DB982655.1|DB982655
EST:     ACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: ACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|23725189|gb|BU760542.1|BU760542
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|15337233|gb|BI497889.1|BI497889
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213616979|gb|DB959291.1|DB959291
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|19053935|gb|BM732602.1|BM732602
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|21995101|gb|BQ786629.1|BQ786629
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|27425956|gb|CA937476.1|CA937476
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10235158|gb|BE804046.1|BE804046
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|151396521|gb|EV266398.1|EV266398
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|9901341|gb|BE610309.1|BE610309
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254315485|gb|GR825294.1|GR825294
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254336035|gb|GR841360.1|GR841360
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|6725980|gb|AW310379.1|AW310379
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|209728958|gb|BW651735.1|BW651735
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|5509723|gb|AI856281.1|AI856281
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTT---AAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|193685767|gb|FK626281.1|FK626281
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10710695|gb|BF010413.1|BF010413
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|9563865|gb|BE473374.1|BE473374
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298198593|gb|HO040132.1|HO040132
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|18040187|gb|BM308481.1|BM308481
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254326261|gb|GR840853.1|GR840853
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|22540875|gb|BU090718.1|BU090718
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|209728957|gb|BW651734.1|BW651734
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|207831021|gb|GD805079.1|GD805079
EST:     GAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: GAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|193543515|gb|FK503772.1|FK503772
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|21676875|gb|BQ629226.1|BQ629226
EST:     GGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: GGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|193559905|gb|FK520528.1|FK520528
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7232928|gb|AW568279.1|AW568279
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|4395961|gb|AI494958.1|AI494958
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAA
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAA
EST: gi|193566763|gb|FK525606.1|FK525606
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213593559|gb|DB977391.1|DB977391
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10710428|gb|BF010119.1|BF010119
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254326260|gb|GR840852.1|GR840852
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|6502156|gb|AW203529.1|AW203529
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7640472|gb|AW734773.1|AW734773
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|209701672|gb|BW660991.1|BW660991
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|58015384|gb|CX702126.1|CX702126
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|193556121|gb|FK511428.1|FK511428
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGA
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGA
EST: gi|15199290|gb|BI423756.1|BI423756
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|5509732|gb|AI856290.1|AI856290
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTT---AAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10231371|gb|BE800259.1|BE800259
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213607561|gb|DB976635.1|DB976635
EST:     TACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7588130|gb|AW703932.1|AW703932
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|5510124|gb|AI856508.1|AI856508
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAG--G-CTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213617330|gb|DB965201.1|DB965201
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298167194|gb|HO010633.1|HO010633
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGGAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|213600956|gb|DB958450.1|DB958450
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7796869|gb|AW782263.1|AW782263
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|10709862|gb|BF009586.1|BF009586
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|7041774|gb|AW471668.1|AW471668
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254336034|gb|GR841359.1|GR841359
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|5510113|gb|AI856497.1|AI856497
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAG--G-CTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|298172601|gb|HO019641.1|HO019641
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|192324005|gb|FK019296.1|FK019296
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|21995227|gb|BQ786755.1|BQ786755
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|15202123|gb|BI425234.1|BI425234
EST:     TGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: TGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|254315484|gb|GR825293.1|GR825293
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|58015691|gb|CX702433.1|CX702433
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
EST: gi|209697662|gb|BW660990.1|BW660990
EST:     CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTC                         ATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG
genomic: CACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtatta ... ttgtgtgtagATGAGAAGGTGCCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattacaatatatagatagagaactagtttatgttttcgtgttttctaccattgaaagaacttcagtgcatctacttttgaatatacaattatat

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA