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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaatttatgacaagtgataagtgttggtttggcatttgtgcttgctggattgtattcatggaaactcatttggtactgcag

Basic information

species Glycine max
transcript GLYMA06G36650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36650.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaatttatgacaagtgataagtgttg--gtttggcatttgtgc--ttgctggattgtattcatggaaactcatttggtactgcag
 || || || ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||   || || |  |   |        ||  ||||    ||||| || |||     || ||   |  | |   ||   |                 
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatctgtgtcaaagtttgtcaattgcatagtttctaattcttgtgtgtgagcag----------------

upper sequence: GLYMA06G36650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g02500.t01 (Vitis vinifera), 5'ss of exon 3
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaatttatgacaagtgataagtgttg-gtttggcatttgtgcttgc-----tggattgtattcatggaaactcatttggtactgcag------
 || || || || |||||| |||| ||||||||||||||||| || ||||| ||||||||||| || || |||||||| || || || || |||||||||||      |      | |     | |||| |   |   |||    | ||   |   |     |||  | |   |   || |   |||||  ||||||       
GACTAAAACTGCCGTTTCTTCTAAACCAATTGTAATGAGAGCAGAATATGCTCATTGTCCTAATCTCACCATTATTGATACCCCGGGTTTCGTTCTTAAGgtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacatatttggtctttgcactaagataaatatttgaaactgcattggcag

upper sequence: GLYMA06G36650.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaat--ttatgacaagtgataagtgttggtttggc--atttgtgcttgctggattgtattca--tggaaactcatttggtactgcag--
|      || || ||   | | ||||||||||| ||| |||| |||||||||  |||||| || || || || |||||||||||||| ||||| |||||||| ||      ||    || ||     |   ||    |  | || |  ||||   | || |    |  ||||   |   ||| | |       || |   
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccattttgcttgtttccaaagagtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg