Sequence
atgc intronic sequence ATGC exonic sequenceGTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattctttttaacaatgttaaaattcaaagaactgcgggattggttgtatttatttggtacattaactgattataaaaatgggtatctgaaaa...
Basic information
species | Glycine max |
transcript | GLYMA06G36130.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G027756_T01 (Zea mays), 5'ss of exon 2
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattct---tttta--acaatgttaaaattcaaagaactgcgggattggttgtatttatttggtacattaactgattataaaaatgggtatctgaaaa
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GTTTGACAAGGAACTGAATAAAGAGGTTGCTATAAAAGTCATTGATTTGGAAGAAGCgtgagtcccttatgaattttaccacaacttcttatttttaacatattagttgttgttttcttttgttttgcactgtcgctaattttccctcggaaaacac-----
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattctttttaacaatgttaaaattcaaagaac-tgcgggattggttgtatttatttggtacattaactgattataaaaatgggtatctgaaaa
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GTTTGATACGGAGCTTAACAAAGACGTTGCCATTAAAGTTATTGATCTGGAAGAATCgtaagtatttgtatttttatagtcttatgtagtatcaaatatgtagtctccacttaaaatttttgg-atagtatttcgtttgctctgtaattaaattgaac
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 5'ss of exon 3
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattctttttaacaatgttaaaattcaaagaactgcgggattggttgtatttatttggtacattaactgattataaaaat---gggtatctgaaaa---
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GTTTGATAAAGAGCTTAACAAAGATGTTGCTATTAAAGTAATTGATTTGGAAGAAGCgtgagtatctagttt-----gatacttctgtttttagtatcttgttctctgtt-cattgatttagatgcttgctcttctatgaacttcttgtttattcagggtttt
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 2
lower sequence: EFJ15774 (Selaginella moellendorffii), 5'ss of exon 2
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattctttttaacaatgttaaaattcaaagaactgcgggattggt-tgtatttatttggtac-attaactgattataaaaatgggtatctgaaaa
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CTTTGACAAGGAGCTCAACAAGGAGGTTGCTATCAAAGTCATTGATCTCGAAGAAGCgtaagttctttcgttctttcatcatctttttttttcctctttcgatcctcctctttacttattttgtactatttcctgatcgcag-----------------
upper sequence: GLYMA06G36130.3 (Glycine max), 5'ss of exon 2
lower sequence: EFJ32910 (Selaginella moellendorffii), 5'ss of exon 2
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattc---tttttaacaatgttaaaattcaaagaactgcgggattggt-tgtatttatttggtac-attaactgattataaaaatgggtatctgaaaa
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CTTTGACAAGGAGCTCAACAAGGAGGTTGCTATCAAAGTCATTGATCTCGAAGAAGCgtaagttctttcgccttctttcttccatctttttttttcctctttcgatcctcctctttacttattttgtactatttcctgatcgcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213611344|gb|DB972745.1|DB972745EST: AGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATC AGAGGATGAAATTGAGGACATTCAGAAG
genomic: AGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatat ... ccatctgcagAGAGGATGAAATTGAGGACATTCAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTGACAGGGAGCTCAACAAAGAAGTTGCTATCAAAGTGATTGATTTGGAAGAATCgtaagtatattctttttaacaatgttaaaattcaaagaactgcgggattggttgtatttatttggtacattaactgattataaaaatgggtatctgaaaa
- - - - GGAGCT
- - - - - AGCTCA
- - - - - - - - - AAAGAA
- - - - - - - - - - AAGAAG
- - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA