Sequence
atgc intronic sequence ATGC exonic sequenceAGGAAGTTTTTAATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGgtttgtatcgagttttttttctctcttttgtttctttatgaatagatttactcagaagtgaaggaatttaaattttcatgtgttcctctgccttacag
Basic information
species | Glycine max |
transcript | GLYMA06G33380.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 2
AGGAAGTTTTTAATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGgtttgtatcgagttttttttctctcttttgtttctttatgaatagatttactcagaagtgaaggaatttaaattttcatgtgttcctctgccttacag-----
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TGGAGGTATTTGATGCTCTCAAGAATCAAACTGTTGACCTCGTCCTGACTGCACATCCAACTCAGTCAGTCCGGAGATCATTGCTTCAAAAGCATGGCAGgttagtctcgaagctttctgaattgttagatcccaggatga---gatttacttgatgacattgaatatttgctatgcagaaatcttggttctatttgttcttt
upper sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G473001_T02 (Zea mays), 5'ss of exon 2
AGGAAGTTTTTAATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGgtttgtatcgagttttttttctctcttttgtttctttatgaatagatttactcagaagtgaaggaatttaaattttcatgtgttcctctgccttacag
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CTGAGGTATTTGATGCCCTCAAGAGCCAGACTGTTGATCTGGTTTTGACTGCACATCCAACACAGTCTGTGAGGAGGTCACTGCTCCAGAAACACTCGAGgttagttt---gccaaccagtgcattgtagttgac--atgcacaacttcgttcagcctttaa----tcttgatcccaatattcttatcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5677022|gb|AI938152.1|AI938152EST: GCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAG GATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGA
genomic: GCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGgtttgtatcg ... tgccttacagGATAAGAAATAATTTAACTCAGTTGTATGCCAAAGACATTACTCCTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAAGTTTTTAATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCAACTCAATCTGTCCGTAGGTCTTTGCTTCAAAAACATGGAAGgtttgtatcgagttttttttctctcttttgtttctttatgaatagatttactcagaagtgaaggaatttaaattttcatgtgttcctctgccttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG