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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggttaaatttttgcatcattcttctttcttccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag

Basic information

species Glycine max
transcript GLYMA06G28090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G458845_T01 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggt--taaatttttgc--atca----ttcttctttcttccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag------------
 || || || ||||  ||  | |||      || ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| || ||||||||||| |||||  ||  || |||  |||   |||    |||  |||| |    | || | | || ||| ||  |  |  ||    | |||| |  |||  |            
TTACTCTCTTCCTTTTTGCAAGCCAAACATGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgctagtcacatattcacctttgtaatttgtaatgtattaaatcactgagctgttatc-tactttgttgtttctcgtttgtgctatag

upper sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G180575_T01 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggt--taaatttttgcat------cattcttctttcttccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag------------
 || || || |||| |||| | |||      || ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| || ||||||||||| |||||  ||  || |||  ||| |       ||||  | || |    | || | |    ||| ||  |      |   || ||||    || | |            
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcacttagtcgtcatg-cactttgtcgttttacgtttgtgttgtag

upper sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggt--taaatttttgcat------cattcttctttcttccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag------------
 || || || |||| |||| | |||      || ||||||||||| ||||||||||| ||||| ||| | ||||| ||||| || ||||||||||| |||||  ||  || |||  ||| |       ||||  | || |    | || | |    ||| ||  |      |   || ||||    || | |            
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcactgagtcgtcatg-cactttgccgttttacgtttgtgttgtag

upper sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggttaaatttttgcatc--------attcttctttct-tccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag
|||||| || ||||| || | |||||    ||| ||||||||||| ||||||||||| ||||| ||  ||||||| || || |||||||||||||| |||||  |||| | || |  ||         || || |||| | ||| |||  | | | || ||    |  | |||| | |   || || ||  ||
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698553|gb|BW656441.1|BW656441
EST:     ATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTG                         TTTAAAATGAGAGAACCCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTC
genomic: ATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggttaaa ... attcttcaagTTTAAAATGAGAGAACCCCAGATGTGCAATGTTGTTTGTCGGCTAACTCTC