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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctcattgaaactctaatcgatgtttatcttatttgatgttcaaatcaatttatcaacgcaaataatgtgccctctctattattttccttcttg...

Basic information

species Glycine max
transcript GLYMA06G25880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctcattgaaactctaa----------tcgatgtttatcttat-ttgatgttcaaatcaatttatcaacgcaaataatgtgccctctctattattttccttcttg
|| || ||||||||||| ||||||||  |||||||||| ||||||||  | | ||||||||| ||||||||||| ||  || |   | |||          | || ||||    ||| || |||||  | |  |||  |  | || | ||| ||       || ||  |    ||   |
GTGGTTATGGAAGCTGTAAATAAGCCAAGGAATATTACTTATAAAGGTCTCAGTGACTTAGTAACTGAgtaaggacttcttcaccttttaaaattgttagcttgaggttttaactatgttcatgtt-gacttgattggttgaagctattaaagttttagtacttttgatgaatttgcag

upper sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctcattgaaactctaatcgatgtttatcttatttgatgttcaaatcaatttatcaacgcaaataatgtgccctctctattattttccttcttg----
||||||||||||||||||||||||||||||||| |||| ||||||||  | || ||||| |||||||||| |||   | || ||   ||     |  |  ||  | | | ||    |||   | | ||  |   || | || || |  |   ||  |||||  |        
GTTGTGATGGAAGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGGCTCACCGACTTGGTGACTGAgtgaggaaactttcaa-tgctctcttacttgcatgatttctaattcgaaaaatgactcattga--taattgatttggca-cggcatgtttttcaataacagcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154103|gb|BM144036.1|BM144036
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|192322372|gb|FK014613.1|FK014613
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|120532442|gb|EH260575.1|EH260575
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|298193777|gb|HO040425.1|HO040425
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|192301816|gb|FG997688.1|FG997688
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|213618101|gb|DB965258.1|DB965258
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
EST: gi|19452428|gb|BM953838.1|BM953838
EST:     AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA                         GACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT
genomic: AATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAgtaaggtctc ... taaattatagGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTT