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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACATTCTGAAGCCGAAGCCAAATCCGCAGCAACTATTGAGGGATTGGCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctctctcaaaaccctaattaattccccttttttgtatttagttttggttatgcttgattttgtgtttatgggtttctattag

Basic information

species Glycine max
transcript GLYMA06G23570.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393870|gb|EV263745.1|EV263745
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCAA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAA
EST: gi|192311177|gb|FK004488.1|FK004488
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAA-TGTGCAGAAGGCTATTAGAGAAGCTGCA
EST: gi|192311178|gb|FK004489.1|FK004489
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAA-TGTGCAGAAGGCTATTAGAGAAGCTGCA
EST: gi|42723184|gb|CK769083.1|CK769083
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCAA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAA
EST: gi|254334772|gb|GR844557.1|GR844557
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCAA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAA
EST: gi|151403536|gb|EV273346.1|EV273346
EST:     GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCG                         ATATACAGAGAGAAGNNNNNNNTGTGCAGAAGGCTATTAGAGAAGCTGCAA
genomic: GCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGgtactcctct ... tttctattagATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAA