1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCAAGCGGAGGGACGACTTCGTCGAGAGCGGATCCGAGGAGAATCAGTATGCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgatatcacataattcacacatcatttttatgtttttgttgttttcttgttgatttcttatgttctcttaattcttatgctcttgcatgcatat...
species | Glycine max |
transcript | GLYMA06G21900.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCCEST: gi|207788224|gb|GD760244.1|GD760244
genomic: GCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgat ... caaaatgcagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCC
EST: GCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCCEST: gi|193496501|gb|FK459035.1|FK459035
genomic: GCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgat ... caaaatgcagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCC
EST: GCTCACAATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAG TGGGTCACCCAEST: gi|193323921|gb|FK291669.1|FK291669
genomic: GCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgat ... caaaatgcagTGGGTCACCCA
EST: CGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCC
genomic: CGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgat ... caaaatgcagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGCGGAGGGACGACTTCGTCGAGAGCGGATCCGAGGAGAATCAGTATGCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGgtatcttgatatcacataattcacacatcatttttatgtttttgttgttttcttgttgatttcttatgttctcttaattcttatgctcttgcatgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC