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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGATGATACTCCATGGGATGGAGgtgagtgaatttgtgtaccaaagatcttactagaaaacaattttgaaatgatgaaatgtttgtcgagtgtcagttaggttttttttccatcttgtgtgttacataactttgtggcatattttgagttattcag

Basic information

species Glycine max
transcript GLYMA06G20310.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315587|gb|GR825396.1|GR825396
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192296721|gb|FG991289.1|FG991289
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192306256|gb|FG996856.1|FG996856
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15661604|gb|BI698975.1|BI698975
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254314541|gb|GR829534.1|GR829534
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192323046|gb|FK015232.1|FK015232
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254336123|gb|GR841448.1|GR841448
EST:     CTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: CTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15662518|gb|BI699889.1|BI699889
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254317876|gb|GR832044.1|GR832044
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|27426316|gb|CA937836.1|CA937836
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254319558|gb|GR829070.1|GR829070
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7589486|gb|AW705259.1|AW705259
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254341096|gb|GR854824.1|GR854824
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192330853|gb|FK023068.1|FK023068
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|17963109|gb|BM269862.1|BM269862
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254320600|gb|GR827049.1|GR827049
EST:     T-CTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254319557|gb|GR829069.1|GR829069
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|15337404|gb|BI498060.1|BI498060
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349254|gb|GR860052.1|GR860052
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7924281|gb|AW830307.1|AW830307
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254327616|gb|GR840180.1|GR840180
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254346548|gb|GR856270.1|GR856270
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|209703448|gb|BW676236.1|BW676236
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|16997113|gb|BM086485.1|BM086485
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192298537|gb|FG988508.1|FG988508
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254336122|gb|GR841447.1|GR841447
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192296000|gb|FG989408.1|FG989408
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAT
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|37996521|gb|CF808110.1|CF808110
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349220|gb|GR860018.1|GR860018
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254349219|gb|GR860017.1|GR860017
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|17153657|gb|BM143590.1|BM143590
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACTCTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|20813094|gb|BQ297564.1|BQ297564
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|26058698|gb|CA801612.1|CA801612
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|151408706|gb|EV278514.1|EV278514
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254314540|gb|GR829533.1|GR829533
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192305758|gb|FG995714.1|FG995714
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254339398|gb|GR848115.1|GR848115
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254315586|gb|GR825395.1|GR825395
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7233698|gb|AW569042.1|AW569042
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|16997209|gb|BM086581.1|BM086581
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|13791412|gb|BG654003.1|BG654003
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254341097|gb|GR854825.1|GR854825
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|7284017|gb|AW596617.1|AW596617
EST:     TTTGGTCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TTTGGTCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|58018058|gb|CX704800.1|CX704800
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|192305759|gb|FG995715.1|FG995715
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|254322473|gb|GR837887.1|GR837887
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
EST: gi|21257139|gb|BQ454027.1|BQ454027
EST:     TCCTGATGATACTCCATGGGATGGAG                         GCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC
genomic: TCCTGATGATACTCCATGGGATGGAGgtgagtgaat ... agttattcagGCACGTTCAAGTTGACACTCCAATTTACTGAGGACTATCCAAATAAACCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTGATGATACTCCATGGGATGGAGgtgagtgaatttgtgtaccaaagatcttactagaaaacaattttgaaatgatgaaatgtttgtcgagtgtcagttaggttttttttccatcttgtgtgttacataactttgtggcatattttgagttattcag

- - - - - - - - -  GATGGA