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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCACCAGCAACCTGCTTTTGACAATCCTAAGCTTAGAGGCCACAAAATATTGgtaatttcagcaactcattcatgccaaaccaaatggccttgccttttaattttgtttgagttcggtaggaatattgcaagcaatttttttttttttttttgaatatttaacgcattggaacttgaattcaagactactttaatttaggcattggattttacag

Basic information

species Glycine max
transcript GLYMA06G19020.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19020.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g08870.t01 (Vitis vinifera), 5'ss of exon 2
AGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCACCAGCAACCTGCTTTTGACAATCCTAAGCTTAGAGGCCACAAAATATTGgtaatttcagcaactcattcatgccaaaccaaatggccttgccttttaattttgtttgagttcggtaggaatattgcaagcaatttttttttttttttttgaatatttaacgcattggaacttgaattcaagactactttaatttaggcattggattttacag
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AGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTTTTGATCATCCTCAGCTAAGAGGAAAGAAACCATTGgtaatttt--ccatttctttccatggaaactgtttctttttctctgtgaacaaagtagatttcagctacaaa--tacatgtatattcttgaaattgttttcagg-----------------------------------------------------------