1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa...
species | Glycine max |
transcript | GLYMA06G17930.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|7588414|gb|AW704210.1|AW704210
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|16106028|gb|BI893768.1|BI893768
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGTTTTTTGCEST: gi|213617811|gb|DB959395.1|DB959395
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACCGCEST: gi|192328314|gb|FK020025.1|FK020025
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|9259946|gb|BE348093.1|BE348093
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|298194444|gb|HO041092.1|HO041092
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|18040877|gb|BM309171.1|BM309171
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|13790786|gb|BG653377.1|BG653377
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGCEST: gi|7232756|gb|AW568109.1|AW568109
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
EST: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGG GTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
genomic: GGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcact ... ttctttttagGTACCAAGCTACAAAGGATGATCTTACTGTTTATGCAGCTTTGCCAACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATATAGCAAGCATGGCAGTCACACTCTACGACCTTAGCTCTTCCTCTGGGTTGAAGAAACTTGATGAGTACCTTCTCCCACGCAGTTACATCACCGGgtatgtcactgcttttatgcttcgtttgtatgttttttttttataaatcctcgtttcttaagtgataaacaagctttaatggctattacagtattaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA