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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag

Basic information

species Glycine max
transcript GLYMA06G17140.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g70190.1 (Oryza sativa), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaa-----gaaat--ttag---tgtaccatttta-attttgttatttaaat-cactattagt-tcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
 ||| | ||||| ||  | ||||| ||||||||||||||||| |||||||| |||||||||||    || ||||| || || ||||||||||||||||| ||||     | |||  |||    || || ||| || ||    | ||  |||   || || ||  || | ||   | ||||   ||     |  ||   | |   | | ||||    || | || ||| |  ||| ||   ||    |   ||   | |||    | |||   || | |||
TCAGTTCATTTCCTCGCATTGGCCCTATTGGAACAGGACAGATGGGGCAGACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaaggaatcattaaccttgaactattgtatatcaaatcatggaaacatacgatgagcctcatctacatactcaatacaacgaaatcattca-gctccaatgtaccaattgttacccttttaca--tgttcaaccatgggatcttatttgcatttg--gtttttccatgattcag

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g70200.1 (Oryza sativa), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
  |||| ||| |  |||| |||||||| ||||| ||  |||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| |||        |||  |       ||  ||| | ||  |  || |  |   || ||||        | |||||| || |  |||  |    |        | | |  ||  ||||                                                    
TGAGCTGATTGCAACAAATTGGCCTTACTGGAATAGATCAGAGGGGGCTGATCATTTCTTTGTTACACCACATGACTTTGGCGCTTGCTTCCACTATCAGgtacatgcacaagtacaa------aaccttgctgttggacacatttattcctcctttag-----tgagcaaattctg-gactttgagcattag---tttagtactgaacacttaa----------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G000581_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgaca-aggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || ||||||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   |||        |||    |  ||   |||   | |||  |  |||    | |  ||   || |  |   | | | | ||  || || |                                                              
TGAGCTGATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAGATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtacaaacaccaccggtacatgaagtagctgtagcgtgcatt--tatctatgcttccattaat----aaagtttagatgctaatcaataatagatgagtattgaat--------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G152029_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgaca-aggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || ||||||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   |||       ||||    |  ||   |||   | |||  |  |||    | |  ||   || |  |   | | | | ||  |  || |                                                              
TGAGCTGATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAGATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagttgtagcgtgcatt--tatctatgcttccattaat----aaagtttagatgctaatcaataatagatgagtactgaat--------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G141094_T02 (Zea mays), 5'ss of exon 1
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaag-gaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
              | ||||||||||| ||||||||  |||| || ||| ||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   |||        |||    |  ||   |||   | |||  |  |||    | |  ||   || |  |   | | |   ||  |  || |                                                              
-------------ACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAAATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtataaacaccaccgatacatgaagtagctgtagcgtgcatt--tatctatgcttccattaat----aaagtttagatgctaatcaataatagatgagtactgaat--------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059825_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
 ||||| ||| || | ||||||||||| ||||| ||  |||| || ||||||||||||||||| || || ||||||||||| || ||||| |||||||| |||  |   | |||  |  |    |||   | | || |      ||||  | ||| |||  |    |  | ||  |   |  ||  |  |  |       | | |                                                              
CCAGCTGATTGCTACGAACTGGCCTTACTGGAATAGATCAGAGGGCGCAGATCATTTCTTTGTCACACCCCATGACTTTGGTGCTTGCTTTCATTATCAGgtacaatgct-agtagatta----aatagcggt-ttcatgcatttatttatccttctaatgaaa-gattagatggttcagcattcagcaatgatagtttagtagtgt------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgaca-aggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || || |||||||||||||| || || ||||||| ||| || |||||||||||||| |||  ||    |  |   |||        |||    |  ||   |||   | |||  |  |||    | |  ||   || |  |   | | | | ||  |  || |                                                              
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatt--tatctatgcttccattaat----aaagtttagatgctaatcaataatagatgagtactgaat--------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G056702_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagt-gtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatgg--attccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag-------
 ||| | |||||       ||||| || |||||||||||||| || ||||| || ||||||||    || ||||||||||| ||||||||||| || || || ||   |  ||   || ||    |  |     ||   |   |||   ||| |  |   ||||   |||  |   ||     |    | ||   |          ||| |  |||  |    |   ||   || | | ||| |  | | ||   | |        |||        
TCAGTTCATTTCCAACCGGTGGCCATACTGGAACAGGACAGAGGGAGCAGACCACTTCTTTGTCGTGCCACATGACTTTGGCGCATGCTTCCACTACCAGgtgagttgtagagccataacaaacca--tgaaccatcagatgtactgccagtgcagtgtggaat--gaacctagcctggaaactcatataacggagtttgaaatctttctatcattctattcatgtttgctcataggaccattcg-tctaatgtcgctcagcacacccattgttcag

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059845_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
 |||    | ||      |||||| || ||||||||||| || ||||| || |||||||| || || || ||||||||||| || |||||| | |  || || ||  |   |   ||||  |  |  |  |  ||  | | ||     |||||        |  | | | | ||      |        |||  || | || | || |   ||   ||| || |||  |  ||                                  
CCAGTACGTCTCCAAGCGCTGGCCCTACTGGAACAGGACGGAGGGGGCCGACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacggacgctaccgatgcagctagga-atgcagagcatgg--agttcc-------agcctagccatttcccccatac------acagcgagcttgcactc-agagtt---gatatatatgcttgctgctgtccag--------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G61840.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
 ||||||||| |||| || ||||| || |||||  | |||||||| ||||| || ||||||||    |||||||||||||| || || ||||||||||||||||  |||  | | |    |     | || || |||  |||   | |||    |||      |  | |||   || |    | |  |   || ||   ||                                                                  
TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaatagaatcttttctcagtctctttttctttctatcctaagtagg--ctttgcttgcttgatcaatacttctacactattcta--aatgatggtgtgc---------------------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttg-gtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag
|||||| |||||||||||||||||||| |||||  ||||||||||||| ||||| ||||||||    |||||||||||||| || ||||| ||||| ||||||||           ||| |  || | ||   ||   | | |  |||   | ||| || |  |   ||  || |  || | || |  ||  |   || |||  |||   |  |                                                      
ACAGCTCATTTCTTCAAACTGGCCTTACTGGAATCGGACAGAAGGGGCTGATCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGCTTTCATTACCAAgtaag-----------accctcgtattcttac-atactagttaggatt---tttttcaaaatctagtacttatatcttgatattggtatgctacatacaatgctttcttgtcctg-----------------------------------------------------

upper sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag-----------------------------
||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| || |||||    || |||||||||||||| ||||||||||| ||||||||||| ||    | |  || | |    ||  |      |||  | | |  |||  | | |       |||   ||| | ||     |   || ||| |  ||    | | | ||| |    ||| || |||    | |    | | |   || ||   || ||                              
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcc--cccacattcattcgtttggatagtctgcttgaat---gtgctcttgaaccaactggccca-gatttagtttttcagagaggcctctggctagtgtctttt-cttcctaaactcattattcactttcactgggcctctgttcatgtccattataacag