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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatactatgaatcttgggatgcgtgttctttttttggttttgcttgcatgctaaatgagtggttggttttctttgttgtgttgtgtgtgtgattctcag

Basic information

species Glycine max
transcript GLYMA06G15510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 3
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatacta------tgaatcttgggatgcgtgttctttt----tttggttttgcttg--------catgctaaatgagtggttggttttct----ttgttgtgttgtgtgtg-tgattctcag-------------------------------------
|| | || || ||||| ||||||||| ||||||| || || || ||||||||||| || || |||||||| ||||| || || |||||||| |||||||||| |    ||||      ||| |  ||| ||  || | || ||    ||  | | |||||         | || || |  |     |    |  |    | |||| |  | | ||  || || |                                        
CTCGGCTCGTTCTTGAGGATGGTTCAGTTTGGAAGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGAAGTGGTATTTAATACATCTTTGACAGGgtaaatcaactaaccgtttgagtgatggcatttgtttcctgttgtggttgagatgtgcttattgttcttcctgatagagaaacaactaacctcatcaaatagttgagacgcgcgtactgcttattgacaacaggaaacaactaacctcatcaaatgggctgcag

upper sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 3
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatactatgaatcttgggatgcgtgt-tctttttttggttttgctt-gcatgctaaatgagtggttggttttctttgttgtgttgtgtgtgtgattctcag
|| | ||||| || |||||||| ||| | ||||  || || || ||||||||||| || || |||||||| |||||||||||||| |||||| ||||||||| |    | | || |    |  | || | | |||   |  ||   || || |||||     || ||  ||| || |||  || ||| | ||| |   ||      
CTCGTCTTGTCCTGGAAGATGGATCAGTGTGGACGGCCAAGTCTTTTGGTGCTTCAGGAACACAAGTTGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaaat-cattttggactgagttacgcttttgtctaagtggggcgatgttttgcatgtcttttg-gttattgtttatctgagtggtggtatgtttcgcatct----

upper sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 2
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatactatgaatcttgggatgcgtgttctttttttggttttgcttgcatgctaaatgagt-ggttggtt-ttctttgttgtgttgtgtgtgtgattctcag
|| | ||||| || |||||||||||| | ||||  || || || ||||| || || || || ||||| || |||||||||||||| |||||| ||||||||| ||   | | || |      ||    |||| || | | |||  ||      |  |  |||  | |||||||| || |||  || |  |    |       |   
CTCGTCTTGTCCTGGAAGATGGTTCAGTGTGGAGGGCCAAGTCTTTTGGCGCATCAGGAACACAAGTCGGTGAAGTTGTTTTCAACACATCACTGACAGGgtaagt-cattttggact----gagttatgtttttgtctgggtagtggc-atgttttgcatgtcttggttggttgtttttttctgcgaggaaaataaagccttgta

upper sequence: GLYMA06G15510.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 2
CTAGACTTGTGCTTGAAGATGGTTCAATTTGGAAAGCAAAATCGTTTGGTGCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatactatgaat--cttgggatgcgtgttctttttttggttttgcttgcatgctaaatgagtggttggttttctttgttgtgttgtgtgtgtgattctcag
|||||||||| ||||||||||| ||| | ||||| ||||| || ||||||||||| || ||||||||||| ||||| |||||||||||||| || ||||||| ||   ||  | |||  |||   ||  |          | |   |    |   ||    || |     |  |    |  |   || | | |   | |||     
CTAGACTTGTTCTTGAAGATGGCTCAGTCTGGAAGGCAAAGTCATTTGGTGCTTCAGGAACTCAAGTTGGAGAAGTGGTTTTCAATACATCTTTAACAGGgttagatgacgttaaatttcttttaattagaaagtggagctagacctcttgtttctgaaggataaa-acataataggataagaattgctttctcattaatt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|213614361|gb|DB966963.1|DB966963
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|298181786|gb|HO025961.1|HO025961
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|19271025|gb|BM887281.1|BM887281
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16284806|gb|BI946280.1|BI946280
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|298173478|gb|HO016814.1|HO016814
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16996720|gb|BM086092.1|BM086092
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16348135|gb|BI973730.1|BI973730
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|15589927|gb|BI674543.1|BI674543
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|209727965|gb|BW666685.1|BW666685
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16283929|gb|BI945815.1|BI945815
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGAACCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|19347243|gb|BM892123.1|BM892123
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
EST: gi|16283309|gb|BI945483.1|BI945483
EST:     GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGG                         GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT
genomic: GCTTCGGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCATTGACAGGgtgaggatac ... tgattctcagGTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCAT