Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgtaatggacaaaactacttattgagatgattaattttatcatcattgttggtgtgcttattcatttagttttgaatctgcag
Basic information
species | Glycine max |
transcript | GLYMA06G15360.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 2
GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgta----------atggacaaaact--acttattgagatgattaattttatcatcattgttggtgtgct-tattcatttagttttgaatctgcag
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GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATGgtacgcccttcacaataactgagctaaacatgttgccatagctatatataccttttatgtatgcatgatatatttcttgtgttttatgtctgcag
upper sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G046098_T04 (Zea mays), 5'ss of exon 2
GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgta----------atggacaaaact--acttattgagatgattaattttatcatcattgttggtgtgct-tattcatttagttttgaatctgcag-----
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GCATGCTGTGCTGTTCTTCAAAGTTGGGTCTCAAGAAAATTTATGACTGGATGgtacgcccttcacaataactgagctaaacatgttgccatagctatatataccttttatgtatgcatgatatatttcttgtgttttatgtctgcagtgtag
upper sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 2
GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgtaatggacaaaacta---cttattg------agatgattaat--tttatcatcattgttggtgtgcttattcatttagttttgaatctgcag
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GCTTGCTGTTATTTTCTCCAGAGCTGGGTCTCAAAGAAGTTCATGACTGGATGgtaatatgcttacctatgccttaatatattctagatgtttactcattttttattattttccagcctaacattgagttgattttgaaattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192295732|gb|FG990826.1|FG990826EST: TGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATG CGTAGTTCTTTTTCCAGTTGCTGTTACCTTCTTCATTACATGGTGGTTTAT
genomic: TGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgtaatggaca ... gaatctgcagCGTAGTTCTTTTTCCAGTTGCTGTTACCTTCTTCATTACATGGTGGTTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGCTGCTTTGTTCTCCAGAGTTGGGTCTCTAAGAAATTTATGACTGGATGgtaatggacaaaactacttattgagatgattaattttatcatcattgttggtgtgcttattcatttagttttgaatctgcag
- TGCTGC
- - GCTGCT
- - - - - - - - - - - - - - - - AAGAAA