Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCCATTGATGCAGCATCATGGCTGTTCAATGTGGTCACGTCTGTGGGAATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctcatcatgacttttcccatttcctctcttgaatctttgatctgtcatgcctatgattttaaagatgtcatgcttcttttctatttgttgttt...
Basic information
species | Glycine max |
transcript | GLYMA06G15280.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G15280.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 2
GCTTCCATTGATGCAGCATCATGGCTGTTCAATGTGGTCACGTCTGTGGGAATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctcatcatgacttttcccatttcctctcttgaatctttgatctgtcatgcctatgatttta-aagatgtcatgcttcttttctatttgttgttt----------------------------
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GCAGCATTAGATGCTGGAGCTTGGATGTTCAACATTGTGACATCTGTTGGTATCATCATGGTCAACAAGGCCTTAATGGCTACACATGGTTTTAGTTTTGgtacgataaattgataatgcttta---ttatttactcatatgtgtgatcacttggaaagatgaatctgtaacaaactcagctactgaacacatgcttgtactaatatgggggtgctattgcttgtacag
upper sequence: GLYMA06G15280.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 2
GCTTCCATTGATGCAGCATCATGGCTGTTCAATGTGGTCACGTCTGTGGGAATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctcatcatgacttttcccat-ttcctctcttgaatctttgatctgtcatgcctatgattttaaagatgtcatgcttct--tttctatttgttgttt-
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GCTGCCCTCGACTTCGCAGCATGGAGTTTCAATGTCACCACATCGGTTGGACTCATCATGGTCAACAAGGCCTTGATGGCTACGTATGGGTTCAGTTTCGgtatgcctgtgctctgctcgtccagggatttatttaccatacctccgactt-tca--ccttcggtctctact-tcttgcgcttctgactgcttagcgctattat
upper sequence: GLYMA06G15280.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 2
GCTTCCATTGATGCAGCATCATGGCTGTTCAATGTGGTCACGTCTGTGGGAATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctcatcatgactttt--cccatttcctctcttgaatctttgatctgtcatgcctatgattttaaagatgtca-tgcttcttttctatttgttgttt
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GCAACTGTTGATGCTGCCGCATGGATGTTCAATGTTGTCACTTCGGTTGGAATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtccc--tcatgactatcaacccacacgctttaatcaatttatcagcctttatattactcatacgatagttctaaatgcattgtgtct-tatgcatttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151402112|gb|EV271925.1|EV271925EST: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTG CTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
genomic: AATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctc ... tattatgcagCTACAACTTTAACTGGTCTCCATTTTGCCACGACAACCTTGTTGACACTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCCATTGATGCAGCATCATGGCTGTTCAATGTGGTCACGTCTGTGGGAATTATTCTTGTCAATAAGGCCTTGATGGCTACATATGGTTTTAGTTTTGgtatgacctcatcatgacttttcccatttcctctcttgaatctttgatctgtcatgcctatgattttaaagatgtcatgcttcttttctatttgttgttt
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